Sciurus carolinensis (gray squirrel): 124979927
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Entry
124979927 CDS
T08117
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncar04040
]
124979927
Ion channels [BR:
ncar04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
124979927
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
124979927
NCBI-ProteinID:
XP_047400804
EnsemblRapid:
ENSSCRG00010010544
LinkDB
All DBs
Position
3:14612819..14655081
Genome browser
AA seq
1857 aa
AA seq
DB search
MASSSLPTLVPIGPDCLRPFTRESLAAIERRAVEEEARLQRNKQMEIEEPERKPRSDLEA
GKNLPLIYGDPPPEVIGIPLEDLDPYYSDKKTFIVLNKGKAIFRFSATPALYMLSPFSIV
RRGAIKVLIHSLFSMFIMITILTNCVFMTMSDPPPWSKDVEYTFTGIYTFESLIKMLARG
FCIDDFTFLRDPWNWLDFSVITMAYVTEFVDLGNISALRTFRVLRALKTITVIPGLKTIV
GALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVRWPPPFNDTNTTWYGNDTW
YGNDTWYGNDTWYANDTWNSQESWASNYTFDWEAYINDKANYYFLDGANDALLCGNSSDA
GHCPEGYECIKAGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIF
FVVIIFLGSFYLINLILAVVAMAYAEQNEATLAEDQEKEEEFQQMLEKLKKHQEELEKAK
ATQALEGGEADGDPAHSQACNGSLDTSPGEKGPPRPSCSADSGISDAMEELEEAHQKCPP
WWYKCAHKVLIWNCCTPWVKFKHIIHLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHF
DNVLSVGNLVFTGIFTAEMVLKLIAMDPYEYFQQGWNIFDSFIVTLSLVELGLANVQGLS
VLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSY
KECVCKIATDCSLPRWHMHDFFHSFLIVFRILCGEWIETMWDCMEVAGQAMCLTVFLMVM
VIGNLVVLNLFLALLLSSFSADSLAASDEDGEMNNLQIAIARIKWGVSFAKTFLLGLLHG
KILSPKEIILSIGELGGTGEAGEAGEGAPEDEKKEPPPEEDDKDLKKDNHILNHVGLVDG
PPSSIELDHLNFINNPYLTIQVPIASEESDLEMPTEEETDTFSEPEDVKKPPQPLYDGNS
SVCSTADYKPPEEDPEEQAEENPEGEQPEECFTEACVQRCPCLYVDISQGRGKMWWTLRR
ACFKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRRVIRTILEYADKVFTYIFILEMLL
KWVAYGFKVYFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSR
FEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCINTTTSERFEISE
VNNKSECESLMHTGQVRWLNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREKEEQ
PKYEVNIYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNA
MKKLGSKKPQKPIPRPQNKIQGMVYDFVTKQVFDITIMILICLNMVTMMVETDDQSQLKV
DILYNINMVFIIIFTGECVLKMFALRQYYFTVGWNIFDFVVVILSIVGLALSDLIQKYFV
SPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMS
NFAYVKKESGIDDMFNFETFGNSIICLFEITTSAGWDGLLNPILNSGPPDCDPTLENPGT
SVRGDCGNPSIGICFFCSYIIISFLIVVNMYIAIILENFNVATEESSEPLGEDDFEMFYE
TWEKFDPDATQFIDYSRLSDFVDTLQEPLRIAKPNKIKLITLDLPMVPGDKIHCLDILFA
LTKEVLGDSGEMDALKQTMEEKFMAANPSKVSYEPITTTLKRKHEEVCAIKIQRAYRRHL
LQRSVKQASYMYRHSQDGNGDGAPEKEGLIANTMSKMYGPENGNSSVQSQGDESSSPGET
GPSTGPTPVSPSDAAPPAPVSPSDAAPPAPVSPSDAAPPPSLPPGQTVRPGVKESLV
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggccagctcatctctgcccaccctggtgcccattggccccgactgcctgcgccccttt
acccgggagtccctggcagccatagaacggcgggcagtggaagaggaggcccggctgcaa
cggaataagcagatggagattgaggagcccgaacggaagccacgcagtgacctggaggcc
ggcaagaacctgcccctcatctatggggaccccccgccggaggtcataggcatacccttg
gaggacctggacccctactacagcgacaagaagaccttcatcgtgctcaacaagggcaag
gccatcttccgcttctcggccacgcctgccctctacatgctgagccccttcagcatcgtc
aggcgtggcgccatcaaggtgctaatccactcgctcttcagcatgttcatcatgatcacc
atcctgaccaactgtgtgttcatgaccatgagtgacccgcctccttggtccaaggacgtg
gagtacaccttcacagggatctacaccttcgagtccctcatcaagatgctggcccggggc
ttctgcattgatgacttcacattcctccgtgacccctggaactggctggacttcagtgtc
atcacgatggcgtacgtgacagagtttgtggacctgggcaacatctcagctctgaggacc
ttccgggtgctgcgggccctgaaaaccatcacagtcatcccagggctgaagacgatcgtg
ggggccctgatccagtcggtgaaaaagctgtccgacgtgatgatcctcaccgtcttctgc
ctgagcgtctttgccctggtggggctgcagctcttcatgggaaacctgcggcagaagtgc
gtgcgttggcccccgcccttcaacgacaccaacaccacgtggtacggcaacgacacgtgg
tacggcaatgacacgtggtatggcaacgacacgtggtacgccaatgacacgtggaacagc
caggagagctgggccagcaactacaccttcgactgggaggcctacatcaacgacaaagca
aactactatttcctggacggtgccaatgatgccctgctctgtgggaacagcagtgatgct
gggcactgcccagagggttacgagtgcatcaaggcgggacggaaccccaactatggctac
accagctatgacactttcagctgggccttcctggctctcttccgcctcatgactcaggac
tactgggagaacctcttccagctgacccttcgagcagccggcaagacctacatgatcttc
ttcgtggtcatcatcttcctgggctctttctacctcattaatctgatcctagcggtggtg
gccatggcgtatgctgagcagaacgaggctaccctagccgaggatcaggagaaagaggag
gagtttcagcagatgctcgagaaattaaaaaagcaccaggaggagttagagaaggccaag
gccacccaggcgctggaaggtggggaggcagacggggacccagcccacagtcaggcctgc
aacggcagcctggacacatcgccaggagagaaggggcccccgcggccgagctgcagcgca
gacagtggtatctctgatgctatggaggagctggaggaggcccaccagaagtgcccgcca
tggtggtacaagtgcgctcacaaagtgctcatatggaactgctgcaccccgtgggtaaag
ttcaagcatatcattcacctgatcgtcatggaccccttcgtggacctgggcatcaccatc
tgcatcgtgctcaacaccctcttcatggccatggagcactaccccatgacggagcacttc
gacaacgtgctttctgtgggcaacctggtcttcacaggcatcttcactgctgagatggta
ctgaagctgatcgccatggacccctacgagtatttccagcagggctggaacatcttcgac
agtttcatcgtcaccctcagcctggtggagctgggcctggccaacgtgcaggggctgtct
gtgctccgctccttccgtctgctgcgggttttcaagctggccaagtcgtggccaacgctc
aacatgctcatcaagatcatcggcaattccgtgggggcgctgggcaacctgacgctggtc
ctggccatcatcgtgttcatcttcgccgtggtgggcatgcagctgtttggcaagagttac
aaggagtgcgtgtgcaagatcgcgaccgactgcagcctgccccgctggcacatgcatgat
ttcttccactccttcctcatcgtcttccgcatcctgtgtggggagtggatcgagaccatg
tgggactgcatggaggtggctggccaggccatgtgcctcaccgtcttcctcatggtcatg
gtcatcggcaacctggtggttctgaacctgttcctggccctcctgctgagctccttcagt
gccgacagcctggcggcctcagacgaggacggcgagatgaacaacctgcagatcgccatc
gcgcgaatcaagtggggcgtcagctttgccaagaccttcctcctggggctactgcacggc
aagatcctgagtcccaaggagataattctcagcatcggggagcttgggggcaccggggag
gctggagaggccggggaaggtgcccctgaggatgagaagaaggagccaccaccggaggag
gatgacaaggacctgaagaaggacaatcacatcctgaaccacgtgggcctggtggatgga
cctccctctagcatcgagctggaccacctcaacttcatcaacaacccctacctgaccatc
caggtgcccatcgcctctgaggagtctgacctggagatgcccacggaagaggagacagac
accttctcagagcctgaggatgtcaagaagccgccgcagccgctctacgatggaaactcc
tccgtctgcagcaccgctgactacaagccccctgaggaggaccccgaggagcaggccgag
gagaaccccgagggggagcagcctgaggagtgcttcacggaggcctgcgtgcagcgctgc
ccctgcctctacgtggacatctcccaaggccgtgggaagatgtggtggaccctccgcagg
gcctgcttcaagatcgtcgagcacaactggtttgagaccttcattgtcttcatgatcctg
ctcagcagtggggccctggccttcgaggacatctacatcgagcagcggcgggtcatccgc
accatcctggaatacgctgacaaggttttcacctacatcttcatcctggagatgctgctc
aagtgggtggcctatggcttcaaggtgtacttcaccaacgcctggtgctggcttgacttt
ctcatcgttgacgtctccatcatcagcctggtagccaactggctgggctactcagagctg
ggacccatcaaatccctgcgcacgctgcgggccctgcgtcccctgagggcactgtcccga
ttcgagggcatgagggtggtggtgaacgcgctcctgggcgccatcccctccatcatgaat
gtgctgctcgtctgcctcatcttctggctcatcttcagcatcatgggtgtcaacttgttc
gctggcaagttctactactgcatcaacaccaccacctcagagaggttcgagatctccgag
gtcaacaacaagtctgaatgcgagagcctcatgcacacgggccaggttcgctggctcaat
gtcaaggtcaactacgacaacgtgggtctgggctacctctccctgctgcaggtggccacc
ttcaagggttggatggacatcatgtatgcagccgtggactcccgggagaaggaggagcag
ccgaagtacgaggtaaacatctacatgtacctctacttcgtcatcttcatcatctttggg
tccttcttcacactcaacctcttcatcggtgtcatcatcgacaacttcaaccagcagaaa
aagaagtttggagggaaagatatcttcatgacagaggaacagaagaagtactataacgcc
atgaagaagcttggctccaagaagccccagaagccaattccccggcctcagaacaagatc
cagggcatggtgtacgacttcgtgacgaagcaggtgttcgacatcaccatcatgatcctc
atctgcctcaacatggtcaccatgatggtggagacggacgaccagagccagctcaaggtg
gacatcctgtacaacatcaacatggtcttcatcatcatcttcacgggggagtgcgtgctc
aagatgttcgccctgcgccagtactacttcacggtcggctggaacatcttcgactttgtg
gtggtcatcctgtccattgtgggcctcgcactgtccgacctgatccagaaatacttcgtg
tcacccacgctgttccgtgtgatccgcctggcgcgaatcgggcgtgtcctgcggctgatt
cgcggagccaagggcatccggacactgctctttgccctcatgatgtcgctacctgccctc
ttcaacatcggcctcctcctcttcctggtcatgttcatctactccatcttcggcatgtcc
aactttgcctacgtcaagaaggagtcgggcattgacgacatgttcaactttgagaccttc
ggcaacagcatcatctgcctctttgagatcaccacatctgctggctgggatgggctcctg
aaccccatcctcaacagcgggcccccggactgtgaccccacccttgagaacccaggcacc
agtgtcaggggcgactgcggcaacccgtccatcggcatctgcttcttctgcagctacatc
atcatctccttcctcatcgtagtcaacatgtacatcgccatcatcctggagaacttcaac
gtggccaccgaggagagcagcgagccacttggcgaggatgacttcgagatgttctacgag
acctgggagaagttcgacccggatgccacacagttcatcgactacagccgcctctctgac
ttcgtggacaccttgcaggagccgctgaggattgccaagcccaacaagatcaagctcatc
accctggacctgcctatggtgccaggggacaagatccactgcctggacatcctctttgcc
ctgaccaaagaggtgctgggtgactctggggaaatggacgctctcaagcagaccatggag
gagaagttcatggcagccaacccctccaaggtctcctacgagcccatcaccaccaccctc
aagaggaagcacgaggaggtgtgcgccatcaagatccagagggcctaccgccggcatctg
ctgcagcgctccgtgaagcaggcctcctacatgtaccgccacagccaggacggcaacggg
gacggggcccctgagaaggagggactgattgccaacaccatgagcaagatgtacggtccc
gagaatgggaacagcagtgtgcagagccagggggacgagagcagctccccaggggagacc
ggaccctccacggggcccacgccagtcagcccctcggacgctgccccgcctgctcctgtc
agcccctcggacgctgccccgcctgctcctgtcagcccctcggacgctgccccgcctccc
tccctaccaccggggcagacggtgcgcccaggagtcaaagagtctcttgtctag
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