Sciurus carolinensis (gray squirrel): 124980025
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Entry
124980025 CDS
T08117
Name
(RefSeq) sodium-dependent serotonin transporter
KO
K05037
solute carrier family 6 (neurotransmitter transporter, serotonin) member 4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04721
Synaptic vesicle cycle
ncar04726
Serotonergic synapse
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09156 Nervous system
04726 Serotonergic synapse
124980025
04721 Synaptic vesicle cycle
124980025
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ncar02000
]
124980025
Transporters [BR:
ncar02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
124980025
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Gene cluster
GFIT
Motif
Pfam:
SNF
5HT_transport_N
Motif
Other DBs
NCBI-GeneID:
124980025
NCBI-ProteinID:
XP_047401065
EnsemblRapid:
ENSSCRG00010001063
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Position
3:63242471..63278232
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AA seq
630 aa
AA seq
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METTPLNSQTVLSACKDGEDCQENGVLQKGVPTTGERAESSQRSNGYSAVPSPSAGDDAP
HSMPAATTTLMAEVHQGERETWGKKVDFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLLP
YTIMAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYAICIIAFYIASYYNTIM
AWALYYLISSFTDQLPWTSCKNSWNTGNCTNYFSEDNITWTLHSTSPAEEFYTRHVLQIH
RSKGLQDLGGISWQLALCIMLIFTIIYFSIWKGVKTSGKVVWVTATFPYIILSILLVRGA
TLPGAWRGVLFYLKPNWQKLLETGVWIDAAAQIFFSLGPGFGVLLAFASYNKFNNNCYQD
ALVTSLVNCMTSFVSGFVIFTVLGYMAEMRNEDVSEVAKDAGPSLLFITYAEAIANMPAS
TFFAIIFFLMLITLGLDSTFAGLEGVITAVLDEFPHIWAKRREWFVLAVVVTCFFGSLVT
LTFGGAYVVKLLEEYATGPAVLTVVLIEAVAVSWFYGITQFCSDVKEMLGFSPGWFWRIC
WVAISPMFLLFIICSFLMSPPQLRLFQYNYPHWSVILGYCIGTSSFICIPMYITYRLIIT
PGTFKERIIKSITPETPTEIPCGDIRLNAV
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggagaccacgcccttgaattctcagacagtgctatcagcctgtaaggatggagaggat
tgtcaggaaaacggagtgctgcagaagggtgtccccaccacaggggaaagagcagagtct
agccaaaggtccaatgggtactcagcagttcccagccctagtgcaggagatgacgctcca
cactccatgccggctgccaccaccaccctaatggctgaggttcatcaaggggaacgggag
acctggggcaagaaggtggatttcctcctctcagtcattggctacgctgtggacctgggc
aacgtctggcgctttccctacatatgctaccagaatggaggaggggcgttccttctcccc
tacaccatcatggccattttcgggggaattccactcttttacatggagcttgcactgggc
cagtaccaccgaaatggatgcatttctatatggaggaaaatctgcccaattttcaaaggg
atcggctatgccatctgcatcattgccttttacattgcctcctactacaacaccatcatg
gcctgggcgctctactacctcatctcctccttcacggatcagctgccctggaccagctgc
aagaattcctggaacactggcaactgcaccaactacttctcagaggacaatatcacctgg
acactccattccacgtcccctgctgaagaattttacacgcgccatgtcctgcagatccat
cggtctaagggactccaggacctggggggcatcagctggcagcttgccctctgcatcatg
ctcatcttcaccattatctacttcagtatctggaaaggtgtcaaaacttctggcaaggtg
gtatgggtgacagccaccttcccttacatcatcctttctattcttctggtgaggggggcc
accctccctggagcctggaggggtgtcctcttctacttgaaacccaactggcagaaactc
ctggagacaggggtgtggatcgatgctgctgctcagatctttttctctcttggtccaggc
tttggggtcctcctggcttttgctagctacaacaagttcaacaacaactgttaccaagat
gcccttgtgaccagtttggtaaactgcatgaccagctttgtttcgggatttgtcatcttc
acggtgcttgggtacatggctgagatgaggaatgaagatgtgtcagaggtggccaaagat
gcaggacccagcctcctctttatcacatatgcagaagccatagccaacatgccagcatcc
acgttctttgccatcatcttcttcctcatgttgatcacactgggcctggacagcacattt
gcaggcttggagggtgtgatcaccgctgtgctggatgagtttccacatatctgggccaag
cgccgggagtggtttgtgcttgctgtggtggttacttgcttctttggatccctggtcacc
ctgacttttggaggggcctatgtggtgaagctgctggaggagtatgccaccgggcctgcg
gtgctcactgtcgtgcttatagaagcagttgctgtgtcttggttctatggtatcactcaa
ttttgcagtgatgtgaaggaaatgcttggcttcagccctggatggttctggaggatctgc
tgggtagccatcagccctatgtttctcctgttcatcatttgcagttttttgatgagccca
ccccagctacgacttttccaatataattatcctcactggagtgtcatcctgggttactgc
ataggaacttcatctttcatctgcatccccatgtatataacttatcggctgatcatcact
ccagggacatttaaggagcgcattattaaaagtatcactccagaaacaccaacagaaatt
ccctgtggagacatccgcttgaatgctgtgtaa
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