Sciurus carolinensis (gray squirrel): 124994613
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Entry
124994613 CDS
T08117
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar01523
Antifolate resistance
ncar04010
MAPK signaling pathway
ncar04014
Ras signaling pathway
ncar04024
cAMP signaling pathway
ncar04062
Chemokine signaling pathway
ncar04064
NF-kappa B signaling pathway
ncar04066
HIF-1 signaling pathway
ncar04071
Sphingolipid signaling pathway
ncar04151
PI3K-Akt signaling pathway
ncar04210
Apoptosis
ncar04211
Longevity regulating pathway
ncar04218
Cellular senescence
ncar04380
Osteoclast differentiation
ncar04613
Neutrophil extracellular trap formation
ncar04620
Toll-like receptor signaling pathway
ncar04621
NOD-like receptor signaling pathway
ncar04622
RIG-I-like receptor signaling pathway
ncar04623
Cytosolic DNA-sensing pathway
ncar04625
C-type lectin receptor signaling pathway
ncar04657
IL-17 signaling pathway
ncar04658
Th1 and Th2 cell differentiation
ncar04659
Th17 cell differentiation
ncar04660
T cell receptor signaling pathway
ncar04662
B cell receptor signaling pathway
ncar04668
TNF signaling pathway
ncar04722
Neurotrophin signaling pathway
ncar04917
Prolactin signaling pathway
ncar04920
Adipocytokine signaling pathway
ncar04926
Relaxin signaling pathway
ncar04931
Insulin resistance
ncar04932
Non-alcoholic fatty liver disease
ncar04933
AGE-RAGE signaling pathway in diabetic complications
ncar04936
Alcoholic liver disease
ncar05010
Alzheimer disease
ncar05022
Pathways of neurodegeneration - multiple diseases
ncar05030
Cocaine addiction
ncar05132
Salmonella infection
ncar05133
Pertussis
ncar05134
Legionellosis
ncar05135
Yersinia infection
ncar05140
Leishmaniasis
ncar05142
Chagas disease
ncar05145
Toxoplasmosis
ncar05146
Amoebiasis
ncar05152
Tuberculosis
ncar05160
Hepatitis C
ncar05161
Hepatitis B
ncar05162
Measles
ncar05163
Human cytomegalovirus infection
ncar05164
Influenza A
ncar05165
Human papillomavirus infection
ncar05166
Human T-cell leukemia virus 1 infection
ncar05167
Kaposi sarcoma-associated herpesvirus infection
ncar05168
Herpes simplex virus 1 infection
ncar05169
Epstein-Barr virus infection
ncar05170
Human immunodeficiency virus 1 infection
ncar05171
Coronavirus disease - COVID-19
ncar05200
Pathways in cancer
ncar05202
Transcriptional misregulation in cancer
ncar05203
Viral carcinogenesis
ncar05206
MicroRNAs in cancer
ncar05207
Chemical carcinogenesis - receptor activation
ncar05208
Chemical carcinogenesis - reactive oxygen species
ncar05212
Pancreatic cancer
ncar05215
Prostate cancer
ncar05220
Chronic myeloid leukemia
ncar05221
Acute myeloid leukemia
ncar05222
Small cell lung cancer
ncar05235
PD-L1 expression and PD-1 checkpoint pathway in cancer
ncar05321
Inflammatory bowel disease
ncar05415
Diabetic cardiomyopathy
ncar05417
Lipid and atherosclerosis
ncar05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124994613
04014 Ras signaling pathway
124994613
04064 NF-kappa B signaling pathway
124994613
04668 TNF signaling pathway
124994613
04066 HIF-1 signaling pathway
124994613
04071 Sphingolipid signaling pathway
124994613
04024 cAMP signaling pathway
124994613
04151 PI3K-Akt signaling pathway
124994613
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
124994613
04218 Cellular senescence
124994613
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
124994613
04620 Toll-like receptor signaling pathway
124994613
04621 NOD-like receptor signaling pathway
124994613
04622 RIG-I-like receptor signaling pathway
124994613
04623 Cytosolic DNA-sensing pathway
124994613
04625 C-type lectin receptor signaling pathway
124994613
04660 T cell receptor signaling pathway
124994613
04658 Th1 and Th2 cell differentiation
124994613
04659 Th17 cell differentiation
124994613
04657 IL-17 signaling pathway
124994613
04662 B cell receptor signaling pathway
124994613
04062 Chemokine signaling pathway
124994613
09152 Endocrine system
04920 Adipocytokine signaling pathway
124994613
04917 Prolactin signaling pathway
124994613
04926 Relaxin signaling pathway
124994613
09156 Nervous system
04722 Neurotrophin signaling pathway
124994613
09158 Development and regeneration
04380 Osteoclast differentiation
124994613
09149 Aging
04211 Longevity regulating pathway
124994613
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
124994613
05202 Transcriptional misregulation in cancer
124994613
05206 MicroRNAs in cancer
124994613
05207 Chemical carcinogenesis - receptor activation
124994613
05208 Chemical carcinogenesis - reactive oxygen species
124994613
05203 Viral carcinogenesis
124994613
05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
124994613
09162 Cancer: specific types
05212 Pancreatic cancer
124994613
05221 Acute myeloid leukemia
124994613
05220 Chronic myeloid leukemia
124994613
05215 Prostate cancer
124994613
05222 Small cell lung cancer
124994613
09172 Infectious disease: viral
05166 Human T-cell leukemia virus 1 infection
124994613
05170 Human immunodeficiency virus 1 infection
124994613
05161 Hepatitis B
124994613
05160 Hepatitis C
124994613
05171 Coronavirus disease - COVID-19
124994613
05164 Influenza A
124994613
05162 Measles
124994613
05168 Herpes simplex virus 1 infection
124994613
05163 Human cytomegalovirus infection
124994613
05167 Kaposi sarcoma-associated herpesvirus infection
124994613
05169 Epstein-Barr virus infection
124994613
05165 Human papillomavirus infection
124994613
09171 Infectious disease: bacterial
05132 Salmonella infection
124994613
05135 Yersinia infection
124994613
05133 Pertussis
124994613
05134 Legionellosis
124994613
05152 Tuberculosis
124994613
09174 Infectious disease: parasitic
05146 Amoebiasis
124994613
05145 Toxoplasmosis
124994613
05140 Leishmaniasis
124994613
05142 Chagas disease
124994613
09163 Immune disease
05321 Inflammatory bowel disease
124994613
09164 Neurodegenerative disease
05010 Alzheimer disease
124994613
05022 Pathways of neurodegeneration - multiple diseases
124994613
09165 Substance dependence
05030 Cocaine addiction
124994613
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
124994613
05418 Fluid shear stress and atherosclerosis
124994613
05415 Diabetic cardiomyopathy
124994613
09167 Endocrine and metabolic disease
04936 Alcoholic liver disease
124994613
04932 Non-alcoholic fatty liver disease
124994613
04931 Insulin resistance
124994613
04933 AGE-RAGE signaling pathway in diabetic complications
124994613
09176 Drug resistance: antineoplastic
01523 Antifolate resistance
124994613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124994613
Transcription factors [BR:
ncar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
124994613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
124994613
NCBI-ProteinID:
XP_047422686
EnsemblRapid:
ENSSCRG00010013899
LinkDB
All DBs
Position
10:complement(53587476..53703625)
Genome browser
AA seq
974 aa
AA seq
DB search
MAGNNPYGGVPEQIFHLNPLSHTIFNPELFPPEMPLPTADGPYLQILEQPKQRGFRFRYV
CEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKHCED
GICTVNAGPKDMVVGFANLGILHVTKKKVFETLEARMTDACVRGYNPGLLVHPDLAYLQA
EGGGDRQLTDREKELIRQAALQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIY
DSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEGFGDF
SPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEIKDKEEVQ
RKRQKLMPNFSDSFGGGSGAGAGGGGMFGSGGGGGSTGTTGPGYGFPHYGFPTYGGITFH
PGTTKSNAGLKHGTMNAESKSDPEDCDTRGGRETINLSGNVIKTTEQDKELGMSSDGNEE
VTPTCTMGVKEEDARFQDNLFLEKAMQLAKRHANALFDYAVTGDVKMLLAVQRHLTAVQD
ENGDSVLHLAIIHLHAQLVRDLLEVTSGLVSDDIINMRNDLYQTPLHLAVITKQEDVVED
LLSAGADLSLLDRLGNSVLHLAAKEGHDKVLSILLKHKKAALLLDHPNGEGLNAIHIAVM
SNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGT
TPLHIAAGRGSTKLAALLKAAGADPLVENFEPLYDLDDSWEKAGEDEGVVPGTTPLDMAT
SWQVFDILNGKPYEPEFTSEDLLAQGDMKQLTEDAKLQLYKLLEIPDPDKNWATLAQKLG
LGILNNAFRLSPAPSKTLMDNYEVSGGTVKELVEALRQMGYTEAIEVIQAAFCTSEASSP
VKTTSQAHSLPLLPSSTRQQIDELRDNDSICDSGVETSFRKLSFTESLTNSSSLLTLNKM
PQDYGQEGPIEGKI
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaaacaatccatatgggggagtgcctgaacaaatatttcatttgaatcctttg
tctcatactatatttaatccagaattatttccaccagagatgccactgcccacagcagat
ggcccataccttcaaatattagagcaacctaaacagagaggatttcgtttccgttacgtt
tgtgaagggccatcccatggcggacttcctggtgcatctagtgagaagaacaagaagtcc
taccctcaggtcaaaatatgcaactatgtgggacctgcaaaggttattgttcagttggtc
acaaacggaaaaaatatccacctgcacgctcacagcctggtgggaaaacactgtgaggat
ggaatctgcactgtgaatgctggacccaaggacatggtggtcggctttgcaaacctgggt
atacttcatgtgacaaagaaaaaagtatttgaaacactggaagcacggatgaccgacgca
tgtgtaaggggctacaatccaggacttttagtgcaccctgaccttgcctatttgcaagca
gaaggtggaggagaccggcagctcacagatcgggaaaaggagctcatccgccaggcagct
cttcagcagacgaaggagatggacctcagcgtggtgcggctcatgtttacagcttttctt
cctgacagcacgggcagcttcaccaggcgcctggaacccgtggtgtcagacgccatctat
gacagcaaagcacccaatgcatccaacttgaaaatcgtaagaatggacaggacagctgga
tgtgtaactggaggggaagaaatttatcttctctgtgacaaagttcagaaagatgatatc
cagattcgtttttatgaagaggaggaaaatggtggagtctgggaaggatttggagatttt
tcccctacagatgttcatagacaatttgccattgtcttcaaaacgccaaagtataaagat
gtcaacattacaaaaccagcctctgtgtttgtccagcttcggaggaaatctgatttggaa
actagcgaaccaaaaccttttctctactatcctgaaatcaaagataaagaggaagtgcag
aggaaacggcagaagctcatgcccaatttttcggatagtttcggcggcggtagcggtgcc
ggggctggaggcggaggcatgttcggtagcggcggtggaggagggagcacgggaactacg
ggtccagggtatggcttcccgcactatggatttcctacgtacggtggaattaccttccac
cctggaaccactaaatccaatgctggactgaagcatggaaccatgaatgctgaatctaaa
agtgatcctgaagattgtgacacgaggggtggcagagagactataaatctctctgggaac
gttatcaaaaccacagaacaagataaggaactgggcatgtccagcgacggaaatgaggag
gtgacgccgacgtgcaccatgggagtaaaggaagaggatgctcggtttcaggataacctc
tttctggagaaggctatgcagcttgccaagaggcacgccaacgcccttttcgactatgca
gtgacgggagacgtgaagatgctgctggctgtccagcggcatctcactgcagtgcaggat
gagaatggggacagtgtcttacacttagccatcatccaccttcatgctcagcttgtgagg
gatctgctagaagttacatctggtttggtttctgatgatattatcaacatgagaaatgat
ctgtaccagacgcccttgcacttggcagtgatcactaagcaggaagatgtggtggaggac
ttgctgagcgctggggctgacctgagccttctggaccgcttgggtaactctgttttgcac
ctagctgccaaagaaggacatgataaagttctcagtattttactcaagcacaaaaaggca
gcactacttcttgaccatcccaacggggaaggtctgaatgccattcacatagccgtgatg
agcaatagcctgccatgtctgctgctgctggtggccgctggagcagacgtcaacgcacag
gagcagaagtctgggcgaacggcactgcacctggctgtggagcatgacaatatctccttg
gcgggctgcctgctcctggagggggatgcccacgtggacagtaccacctatgatggaact
acacccctacacatcgcagccggcagagggtccaccaagctggcagctcttctcaaagca
gcaggagcagatcccctggtggagaactttgagcctctctatgacctggatgactcttgg
gaaaaggctggagaggacgaaggggtcgtgcctggaaccacacccctagatatggctacc
agctggcaggtatttgacatcttaaatgggaagccatatgagccagagtttacatctgag
gatttgctggcacagggagacatgaaacagctgactgaagatgcaaaactgcagctctac
aagttgctagaaatccctgatccagacaaaaactgggctactctggcacagaagttaggt
ctggggatacttaacaatgccttccggctgagccctgccccttccaaaactctcatggac
aactatgaggtctctggggggacggtcaaagagctggtggaggccctgagacagatgggc
tacacggaagcaatcgaagttatccaggcggccttctgcacctcagaagcctccagccct
gtgaagaccacctctcaggcccactcactgcctctcttgccttcctccacaaggcagcaa
atagatgagctgcgagacaatgacagcatctgtgacagtggtgtggagacatccttccgc
aaactcagctttacagagtctctgaccaacagcagctcattgctaactcttaacaaaatg
ccccaagattacgggcaggaaggacctatagaaggcaaaatttag
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integrated database retrieval system