Sciurus carolinensis (gray squirrel): 124994956
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Entry
124994956 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03020
RNA polymerase
ncar03420
Nucleotide excision repair
ncar05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124994956
09124 Replication and repair
03420 Nucleotide excision repair
124994956
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
124994956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124994956
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124994956
Enzymes [BR:
ncar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124994956
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124994956
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124994956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
124994956
NCBI-ProteinID:
XP_047423261
EnsemblRapid:
ENSSCRG00010015006
LinkDB
All DBs
Position
10:complement(96302838..96350289)
Genome browser
AA seq
1179 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESXKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYNQRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGMSSVLQNLFQVRYNGFTGRKITSQIFIGPTYYQRXKHMVDDKIHSRARGPIQILNR
QPMEGRSRDGGLRFGEMERDCXIAQGAAQFLRERLFEASDPYQGHVCNLCGIMAIANTRT
HTYECRGCRNKTQVYFFVRMPYACKLLFQELMSMSIALE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgcggacgaggatatgcaatatgatgaggatgatgatgaaatcaccccagat
ttgtggcaagaagcatgctggattgtaatcagttcttattttgatgaaaaaggcttggtc
agacaacagttggattcttttgatgagtttattcagatgtccgttcaaagaattgtggaa
gatgctccacctattgacctacaagctgaagctcaacatgctagtggagaagtcgaagaa
ccaccaaggtatttgttgaagtttgaacagatttacctctccaaacctacccattgggaa
agagatggtgctccttcaccaatgatgccaaatgaggccagattaagaaatctcacgtat
tctgctccactttatgttgacataacaaaaacagtcattaaagaaggtgaagaacaactt
cagactcagcatcagaaaacttttataggaaaaattccaattatgttgcgttcaacttac
tgcctgttaaatggcttaacagatcgtgacctttgtgagttaaatgaatgtcccttggat
cctggtggctattttattattaatggatctgaaaaggttctgattgcccaagagaaaatg
gcaacaaacacagtctatgtgtttgccaaaaaggattctaaatatgcctacacaggagag
tgtaggtcatgtctggagaattcttcccgacctaccagtactatatgggttagcatgctg
gcaagaggagggcagggtgcaaaaaaaagtgctattggtcagcgcatcgtggcaactcta
ccatatatcaagcaagaagttcccatcattattgtgttcagagcattaggttttgtgtct
gatagagatatcctagaacatattatttatgattttgaagatccagagatgatggaaatg
gttaaaccttctcttgatgaagcttttgtcattcaagaacagaatgttgcattaaatttc
attggttcaagaggggcaaagcctggcgttactaaagagaaaagaattaaatatgcaaaa
gaagtcttacaaaaagaaatgcttcctcatgttggtgttagtgatttttgtgagaccaaa
aaagcatatttcttgggatatatggttcataggttacttctggccgctttgggtagaaga
gaactagatgacagagatcactatggaaacaaaagattggatcttgccgggccactactt
gcgttcttatttagaggtatgtttaagaatttgctgaaagaagtgcgaatctatgcacag
aagtttattgatcgaggaaaggactttaacttggaattggcaattaaaacgagaataata
tctgatggcttaaaatactctttagctactggaaattggggtgaccaaaagaaagctcat
caagccagagctggagtatctcaggtattaaaccgtttgacttttgcatctactctgtct
cacctgcgtcgtttaaattctccaattggtagagatggcaaactagcaaaaccaagacag
ttacataatacattgtggggaatggtttgtcctgctgagaccccagagggccatgctgta
ggacttgtgaagaatttagccctgatggcttatatttcagttggatctcaaccttctcca
attctggaatttttagaagaatggagtatggaaaatttagaagaaatttctcctgcagct
attgctgatgcgactaagatttttgttaatggctgctgggttggaatacataaagatcct
gaacaactcatgaacaccctgaggaaattgcggcgtcagatggacatcattgtgtctgaa
gtttctatgatcagagatattcgagagagagagattcggatctatacagatgcaggacgt
atttgtagaccacttctgattgtggaaaaacaaaagctacttttaaagaagagacatatt
gaccaattgaaagagagagaatataacaactacagttggcaggatcttgtggccagtggg
gtagtagaatatatagataccctagaagaagaaacagtgatgcttgcaatgaccccagat
gatttacaggagaaagaagttgcttattgttccacttatacccattgtgagattcatcca
tcaatgatccttggtgtctgtgcgtctattattccctttcctgatcataaccagtcccct
agaaacacataccagtctgctatgggtaagcaggctatgggagtatatatcaccaacttc
catgtgcgtatggacacattggcccatgttctctattatcctcaaaaaccacttgtgact
acccggtctatggaataccttcgatttagagagttgccagcaggtatcaactcaattgtg
gccatcgcgtcatacactggatataatcaagaagactctgttatcatgaatcgttcagct
gtagaccgaggctttttcaggtctgttttctatcgctcatacaaagaacaggagtctnaa
aaaggatttgatcaagaagaggtttttgagaagcctacacgtgaaacatgccagggtatg
aggcatgccatttatgacaagctggatgatgatggtttgatagccccaggggttcgagta
tctggagatgatgttattataggtaaaacagtcaccttgcctgaaaatgaggatgaattg
gaaagtaccaacagacgctataaccagagagactgtagcacgtttctcagaaccagtgag
acaggcattgtggatcaggttatggtaactctcaaccaggaaggatataaattttgtaaa
ataagggtacgctctgttagaattccacagattggagacaaatttgctagcagacatggt
cagaagggtacctgtggtattcagtatagacaagaggatatgccttttacctgtgaaggt
attacgcctgatatcatcataaatccccatgccatcccctctcgtatgactattggtcac
ttgattgaatgtcttcaagggaaggtatcggctaacaagggtgaaattggtgatgccact
ccatttaatgatgctgttaatgtacagaagatttctaatcttttgtctgattatggctac
catctcagaggaatgagttctgtgcttcaaaatctgtttcaggttcgctacaatgggttc
actggtcgaaaaatcacatcacaaatttttattggccccacttactaccagcgtntgaaa
catatggtggatgacaaaattcattctcgtgctaggggacctattcagatccttaataga
caacccatggaggggagatctcgtgatggtggcctgcgttttggagaaatggaacgagat
tgtnncattgcccagggagcagcccagtttttaagggaaaggttgtttgaggcatcagat
ccatatcagggtcatgtttgcaatctttgtggaataatggcgattgctaacaccaggacc
catacatatgaatgcaggggctgtcgcaataaaacccaggtgtatttctttgtgcgaatg
ccttatgcatgcaagctgttgttccaggaacttatgtctatgagtattgcactcgaatga
DBGET
integrated database retrieval system
