Nocardiopsis changdeensis: KGD84_24095
Help
Entry
KGD84_24095 CDS
T08932
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ncg
Nocardiopsis changdeensis
Brite
KEGG Orthology (KO) [BR:
ncg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ncg03009
]
KGD84_24095 (rimO)
Enzymes [BR:
ncg01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
KGD84_24095 (rimO)
Ribosome biogenesis [BR:
ncg03009
]
Prokaryotic type
ribosomal protein modification factors
KGD84_24095 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
QUX26183
LinkDB
All DBs
Position
complement(5358219..5359661)
Genome browser
AA seq
480 aa
AA seq
DB search
MSPRRTVSLVTLGCARNEVDSEELAGRLSAGGWELVDEGTEADVTLVNTCGFIDAAKQDS
INTLLEAAENGGRVVAAGCMAERYGSELAEALPEAQVIGFDDYAAITDRLDDVLEGRTLV
PHDPRDRRTLLPISPAERGSAQLHIPGHGGFADAAGADGTELPYRAAIPRRRLTGGPVAN
LKIASGCDRRCTFCAIPAFRGAYISRHPDEIVREAEWLASEGVREVFLVSENSTSYGKDL
GDVRALEKLLPRLAGVEGLDRVRVSYLQPAEVRPGLVDVLTGTPGVVPYFDLSFQHASGT
LLRRMRRFGDRERFLELLDTVRSRVPEAGARSNFIVGFPGETEAEFEDLVAFLEAARLDA
IGVFGYSDEDGTEAREHPNKVPEEVVAERVDRLNRLSEELMAQRAEERVGEEVTVLVETV
LEDGAYEGRSEHQAPEVDGSTILYGEGLAAGDLVRATVVQAVGADLVAEQDEEAGEAGDR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccgcgccgtactgtctcgctggtcaccctggggtgtgcgcgtaacgaggtcgac
tccgaagagctggccggccgcctgtccgcgggcggctgggagctggtcgacgaaggcacc
gaggccgacgtcaccctcgtcaacacctgcgggttcatcgacgccgccaaacaggactcc
atcaacaccctgctggaggccgccgagaacggcggccgggtcgtcgccgccggctgcatg
gccgagcgctacggctccgagctggccgaggcgctccccgaggcgcaggtcatcgggttc
gacgactacgcggccatcaccgaccgcctcgacgacgtgctcgagggccgcaccctggtc
ccgcacgacccgcgcgaccggcgcaccctgctgccgatcagcccggccgagcgcggctcc
gcgcagctccacatccccggccacggcgggttcgccgacgccgccggggccgacgggacg
gagctgccctaccgcgccgcgatcccgcgccgccgcctgaccggcggcccggtggccaac
ctcaagatcgcctccggctgcgaccgccgctgcaccttctgcgccatcccggccttccgc
ggcgcctacatctcccggcacccggacgagatcgtgcgcgaggccgagtggctggcctcc
gagggcgtgcgcgaggtgttcctggtcagcgagaactccacctcctacggcaaggacctg
ggcgacgtgcgcgcgctggagaagctgctgccgcgcctggccggggtcgaggggctggac
cgggtccgggtcagctacctccagcccgccgaggtccgccccgggctggtggacgtgctc
accgggacccccggcgtggtgccctacttcgacctgtcgttccagcacgccagcgggacc
ctgctgcgccgcatgcgccgcttcggcgaccgcgagcgcttcctggagctgctggacacc
gtgcgctcccgggtgcccgaggcgggtgcccgctccaacttcatcgtcgggttccccggc
gagaccgaggccgagttcgaggacctggtcgccttcctggaggcggcccgcctggacgcc
atcggcgtcttcggctactccgacgaggacggcaccgaggccagggagcacccgaacaag
gtgcccgaggaggtcgtcgccgagcgcgtggaccgcctcaaccgcctctcggaggagctg
atggcccagcgcgccgaggagcgcgtgggcgaggaggtcaccgtcctggtcgagaccgtc
ctggaggacggggcctacgagggacgctccgaacaccaggcccccgaggtcgacgggagc
accatcctctacggtgagggactggccgcgggcgatctggtccgggccaccgtggtccag
gccgtcggcgcggacctggtcgccgagcaggacgaggaagccggggaagccggagacaga
tga
DBGET
integrated database retrieval system
