Nitrosopumilus cobalaminigenes: C5F47_01840
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Entry
C5F47_01840 CDS
T06688
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
ncl
Nitrosopumilus cobalaminigenes
Pathway
ncl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ncl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C5F47_01840 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncl03021
]
C5F47_01840 (rpoB)
Enzymes [BR:
ncl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C5F47_01840 (rpoB)
Transcription machinery [BR:
ncl03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
C5F47_01840 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
FYVE_2
MRNIP
Zn_Tnp_IS1595
OrfB_Zn_ribbon
Ribosomal_L37e
Motif
Other DBs
NCBI-ProteinID:
QLH02391
UniProt:
A0A7D5LZT1
LinkDB
All DBs
Position
326485..329832
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AA seq
1115 aa
AA seq
DB search
MVDPSTKRWPVIQDILKREGIARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQL
GKVKLQQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVP
VMAKSNACILHNFSSQKLIEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRETVG
GNIVFKAKVYSSIVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREIAS
VVSLVDDIQDELEGSFEKAGDVPTSKDAIVYISKRIAPGMLEEFQIKRAETLLDWGLLPH
LGKHPENRKEKAQFLGEAACKLLELKLGWITPDDKDHYGNKVIKFAGQMLADLFRTAFRN
LVRDMKYQLERSGQKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLLDRTNYL
STISHLRRIQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNV
PSEEIVEKLYDLGTVHFFDAKEDLKKDGTRIFVDGRLIGYAKDGQELAESLRELRRNSKI
HPHVGVSFHKSEIEGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTSELLDKISKKLLSWTD
LLRMGVLEMIDANEEENCYVTLDEKDAKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNT
YESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNCVVAVL
PFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRDSFEIPNAEDNIRGYKG
ERAYRLLEDDGVVASEATVKGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSEA
GVIDTVVMTQSNEGGKMYKIRARDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTASGM
SPDVLINPHAFPSRMTVGMMMESICGKAAALRGKRFDGSAFVGEKMPEVKEVMDAHGFEY
SGKEIMYDGRTGKAFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGG
GLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKYVCRVCGD
KAKVSSVSVAYAFKLLLQEMQSLNVAPRLLIKEKI
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggtagatccttcaactaaaagatggccagtaattcaagacatcttaaaacgagaaggt
attgctcgtcaacacctaaactcttttgatgaatttttagaaagaggactacagagtatc
attaatgaagttggacaaattgatattgaaaatgcagaatatccatacaagattcaactt
ggtaaagtaaaacttcaacaaccaagaatgatggaactagatggctctattacacacatt
actccagctgaagctagattgagaaatgtttcttattctgcaccagtaatgatggaagca
agtgttgttgaagatggaaaaatcctagaatcaagatttgtccatattggagatgtacca
gtaatggcaaaatctaatgcatgtattttacacaatttctcttctcaaaaattaattgaa
catggtgaagatccaaatgatcctggtggttactttatcatcaatggttcagaacgtgtc
atcgttggattagaagatttatcatacaacaaaattattgtagatagagaaactgtaggt
ggcaacattgttttcaaagccaaagtatattcttcaattgtaggttatcgtgcaaaatta
gaactcgtcatgaaaaatgatggattaattgtagcccgaattcctggttctcctgtagat
atcccagttgttactttgatgagggcacttggactagaatccgatagagaaatcgcatct
gtagtttcactagttgatgacattcaagatgaattggaaggctcttttgaaaaagcagga
gacgtaccaacatcaaaggatgccattgtctatatcagtaaaagaattgcacctggaatg
ttagaggaattccaaattaaacgtgctgagactttgcttgattggggcctcttacctcac
ttgggaaaacatcctgaaaacagaaaagaaaaggcacaattcttgggtgaagcagcttgt
aaattattagaattaaaacttggatggattactccagatgacaaagatcattatggaaac
aaagtaatcaaattcgcaggacaaatgttggcagatcttttcagaactgcatttagaaat
ttggttagagatatgaaatatcaattagaaagatctggtcaaaaacgtggaattaatgca
gttgctgcagcaattcgaccgggaatcattactgataaactaaacaatgctattgcaaca
ggaaactggggaagaggtagagtaggtgttactcaattacttgacagaactaactatcta
tcaacaatcagtcatcttagaagaatccaatctcctctaagtagaacacagccaaacttt
gaggcaagagatttgcatgcaactcactttggaagaatttgtccaagtgaaactcctgaa
ggttctaactgtggtttggtgaaaaacttggcactatctggaattatctccgttaatgtc
ccatctgaagaaattgtagaaaaactctatgatcttggaactgttcatttctttgatgca
aaagaagatttgaaaaaagacggaaccagaatttttgtagatggtagattaattggatat
gccaaagatggtcaagaactagcagaatcccttagagagttgagaagaaactcaaagatt
cacccacacgtcggagtatcattccataaatccgaaattgaaggttcaacaagaagactg
tatgtcaattgtaatgctggtagagtattacgtccattaatcattatcaaagataacaag
ccattacttacttcagaattattagataaaatttcaaagaaactactctcatggactgac
ctcctgagaatgggtgtcttggaaatgattgatgcaaacgaggaagaaaattgttatgtt
acattagatgaaaaagatgcaaagaaacacactcacttggaagtattcccaccggcaatt
cttggtgcaggcgcttctatcattccatatccagaacacaaccaatctccaagaaataca
tacgaatctgcaatggcaaaacagagtttaggattttcaacacctatgatgaatactagt
acatatgttagacaacactttatgctgtatcctcaagttccaattgttaatacaaaagca
atgaaactattaggtctagaagatagacctgcaggacaaaattgtgttgttgcagtatta
ccatttgatggttacaacatcgaggatgctatcgtattgagtaaagcatctgttgataga
ggtcttggtagaactttcttctttagaatttatgatgctgaagcaaaacaatatcctggt
ggaatgcgtgacagctttgaaattcctaatgctgaagataacattagaggttacaaaggt
gaacgagcatacagattacttgaagatgatggagtagttgcatcagaagccacagtcaaa
ggtggagatattttgattggaaaaactagtcctccaagatttatggaagagtaccgagaa
ttcgaatcttctggtccttacagacgagatacttcaattggtgtaagaccatctgaagca
ggtgttattgatactgtagttatgactcaatcaaacgaaggtggaaaaatgtataaaatt
agagcccgtgatatgagaattccagaaattggtgacaaatttgcatcaagacacggacaa
aaaggtgttctaggaattttagctaaagcagaagacttgccatatactgcaagtggaatg
tctcctgatgttttgattaatcctcatgcattcccttcaagaatgacagttggaatgatg
atggaatctatctgtggtaaagcagcagcattacgtggaaaaagatttgatggttcagca
tttgtcggagagaaaatgcctgaggttaaagaagtaatggatgcacatggtttcgaatat
tctggtaaagaaataatgtatgatggaagaactggaaaagcattcccagttgaagttttc
attggagttgtatattaccaaaaacttcaccacatggttgcagacaaaatccatgcaaga
gcacgtggacaagttcagatgttaactaaacaaccaactgaaggaagagcaagaggtggt
ggtttaagatttggtgagatggaaagagactgtttaattgcatatggtgcttctatgatt
cttaaagacagattgttagacgagtctgataaatctgatatttttgtatgtgaaagatgt
ggactggttgcatatcatgatgttaaacaaagaaaatacgtttgcagagtttgtggtgat
aaagccaaagtatcttctgtatctgtcgcatatgcattcaaactactcttacaagaaatg
caaagtcttaacgttgcaccgagattgttaatcaaggagaaaatctag
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