Nymphaea colorata (blue-petal water lily): 116247186
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Entry
116247186 CDS
T07418
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03020
RNA polymerase
ncol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116247186
09124 Replication and repair
03420 Nucleotide excision repair
116247186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116247186
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116247186
Enzymes [BR:
ncol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116247186
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116247186
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116247186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
116247186
NCBI-ProteinID:
XP_031475059
LinkDB
All DBs
Position
2:16510514..16520815
Genome browser
AA seq
1184 aa
AA seq
DB search
MYAGEEIDDDNEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI
EVRPESQHNPGRQADFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
LYVDVTKRVIKKGHDSEELVEKQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVR
MLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMEM
LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETK
KAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKTYVQ
KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPI
LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVG
VIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQLRETQEEGWHDLVAKGFI
EYIDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPISQDDSQGQASRYTRRDHSTSLRHSE
SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEG
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCK
NKTEIVQVYIPYACKLLFQELMSMAIAPRMLTKEIKKSKDQKKK
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcgggggaagagatcgacgatgacaacgaagaggaggagatcacccaggaggat
gcctgggccgttatcagtgcctacttcgaggagaagggtttggtgcggcagcagctcgat
tccttcgacgagttcattcagaataccatgcaggagattgttgacgagtctgccgacatc
gaagtacggccggagtcccagcacaacccggggcgtcaggcggactttgcggagaccatt
tataagatcagtttcggtcagatatacttgagcaaacccatgatgacagaatcagatgga
gaaactgcaactttgtttcccaaggctgctaggttgaggaacttgacttactcagccccg
ttatacgtggatgtcacaaaaagagtaattaagaaagggcatgactcggaagagctcgta
gagaagcaggatttcactaaagtcttcattggaaaggtcccaattatgcttcgttctagt
tactgcacattgtatcagaactccgagaaagatctaacagaacttggggaatgcccatac
gaccaaggtggctatttcatcatcaatggcagtgaaaaagttttgattgcacaagagaag
atgagtacaaatcatgtatatgttttcaaaaaaagacagccaaacaagtatgcatacgta
gcagaggtacgatctatggccgagtcacagaataggccaccaagcagcatgtttgttcga
atgctctctcggaccagtgctaaagggggttcctctggacaatatattcgagctactctc
ccttacatcaggacagagatcccaataattattgtgttcagagcacttgggtttgttgct
gacaaggacatattagagcacatctgttatgacttctctgacactcagatgatggagatg
cttcgtccatcactagaggaagcttttgttatccaaaatcaacaggtcgcgttggactac
attgggaagagaggatcaacagtaggtgttacaaaggagaagcggatcaagtatgccaag
gagattctacagaaggaaatgcttccgcatgttggggtcggagaatattgtgaaacaaaa
aaagcatattattttggatatatcatccatcgtcttctactgtgtgctcttggtcggagg
cctgaggatgatagggatcactatggaaacaagaggctggaccttgcaggtcctttgctt
ggaggcctgttcagaatgcttttccgcaagctgacaagggatgttaaaacatatgtccaa
aagtgtgtagataatggaaaggatgtaaatcttcaatttgcaattaaagctaagacaatt
actagtggtttgaaatactctcttgctactggaaattggggccaagcaaatgctgcaggg
acaagggcaggagtttcacaggtgttgaatcgtttgacatatgcgtcaaccttgtcccat
ttgcggaggttaaactctccaattggccgtgaagggaaattagcaaagccacgtcagctg
cacaattcacattggggaatgatgtgtcctgcagagacacctgaaggacaggcttgtgga
ctcgtgaaaaatttagcgttaatggtgtatataacagtgggttcagctgcaaatcctatc
ttagagtttcttgaagaatggagcactgaaaattttgaggaaatatctcccgctgtcatt
cctcaagcaactaaaatttttgtcaacgggtgttgggttggcatacaccgcaatcctgaa
cttttggtgaaaaccctcagacaactcagaagacaggtcgatgttaatacagaagtgggt
gttattcgagacatccgcttgaaagagctccgcctgtatactgactatggtcgctgcagt
cgtcctttgttcattgtagaaaaacaaagattactaattaagaaaaaagacattcgagct
cttcagctaagggaaacccaggaggaaggttggcatgatcttgtggcaaaaggtttcata
gaatatatagatacagaagaagaggaaaccacaatgatttcaatgactatttcagattta
gtcagtgcaaggctcaatcctgaggaggcttactcagagacatacacccattgtgaaatc
catccatcattaatacttggcgtctgtgcttctatcatcccattccctgatcacaatcag
tctcctcgtaacacataccagtcggcaatgggtaagcaagctatgggaatatatgtcacc
aactatcaactgcgaatggatactttggcatatgttctttactaccctcagaagcctctt
gttactacacgtgccatggagcatttacatttcagacagctgcctgctggaattaacgct
attgttgctattgcctgttactcaggatacaatcaggaagattctgttatcatgaatcaa
tcttcgattgatcgtggattcttccggtcgttgtttttccgttcgtacagggatgaggag
aagaaaatgggaacccttgttaaagaggattttggacgtcccaatcgggagaatacaatg
ggcatgcggcatggatcatatgacaagttggatgatgatggtcttgcacctcctggtaca
agagtctcaggtgaggatgtcataatagggaagacatcacctatttctcaggatgattca
caaggacaagcatcacgttatacaaggcgtgatcatagcacaagcttgcgccatagtgaa
agtggcatggttgatcaggttttgttgacaacaaatgctgatggtttgagatttgtgaaa
gtgagaatgagatctgttcgtattccacagattggagataagtttagtagtaggcatgga
caaaagggtactgtgggtatgacatattgccaagaggatatgccatggacggtggaaggc
attacacctgacattattgtcaacccacatgctattccgtctcgaatgacaattgggcag
ctgattgagtgcatcatgggcaaagtggcagctcatatgggaaaggaaggagatgctact
ccatttacagatgtcacagtggataatatcagcaaggcccttcacaaatgtggttaccag
atgcgtggctttgagaccatgtacaatggccacactggtcggagacttagtgctatgata
tttcttggtcctacatattaccaaaggctgaagcatatggtggacgacaagattcactcc
cgtggtcgtgggcctgtgcaaattcttacaaggcagccagctgagggacggtctcgtgat
ggagggttgcgttttggagagatggaacgtgattgtatgattgctcatggagcagcacat
ttcctcaaggaaagactttttgatcaaagtgatgcatacaggattcatgtctgtgaacgt
tgtggactgattgcaattgccaacctcaagaagaactctttcgagtgtagaggatgcaag
aacaagactgagattgttcaggtctacataccatacgcctgcaagctgttattccaagag
ctgatgtccatggctattgcaccgagaatgcttaccaaagagattaagaagtccaaagat
caaaagaagaaataa
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integrated database retrieval system
