Nymphaea colorata (blue-petal water lily): 116259962
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Entry
116259962 CDS
T07418
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03020
RNA polymerase
ncol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116259962
09124 Replication and repair
03420 Nucleotide excision repair
116259962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncol03021
]
116259962
03400 DNA repair and recombination proteins [BR:
ncol03400
]
116259962
Enzymes [BR:
ncol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116259962
Transcription machinery [BR:
ncol03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116259962
DNA repair and recombination proteins [BR:
ncol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116259962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
G1_gp67_C
TACC_C
Motif
Other DBs
NCBI-GeneID:
116259962
NCBI-ProteinID:
XP_031493860
LinkDB
All DBs
Position
9:complement(12668645..12677320)
Genome browser
AA seq
1830 aa
AA seq
DB search
MDTRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETMDRGKPKPAGLSDPRLGTI
DRKLKCETCSANMAECPGHFGHLELAKPMFHIGFMKTVLAILRCVCFNCSHILADEEDHR
FKQALKIRNPKARLKKVLDCCKSKQKCEGGDDIDEDQGQDLEDAPKKKKRGGCGAMQPKI
TIEGMKIIAEYKVPRKKSDEQEQMLPEPVERKQQLSAERVLNVLKRISDEDCLLLGLNPQ
YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH
IISEFAELLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
SARTVITPDPTINIDELGVPWSIALNMTYPETVTPYNIERLKELVENGPHPPPGKTGAKY
IIREDGQRVDLRYLRKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMP
YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV
QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFAGKIPAPAILKPRPLWTGKQVFNLIIPK
QINLIRYSAWHSESETGFITPGDTCVRIEKGELLSGTLCKKTMGTSSGSLIHVIWEEVGP
DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQE
KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINIS
QMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG
GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
SQKLDSLKMKKAEFDKVFRFEFDDENWDPSYLQPDFVEDLKTIKELQDVFHAEVQKLEAD
RRQLATEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLK
VVPGEDAMSMEAQKNATLFFNILLRSTFASKRVSKEYRLTREAFDWVIGEIESRFLQSLV
APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
YLKPEVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMTTIIEEDIDFVRSYYEMPD
EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI
RIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVSKFDENEG
FKPEVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVIS
FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAE
SDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGMDFGMTPSRSPIT
GTPFHEGMMSPSYLFSPNIRASPITDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGY
SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPTYS
PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPPSARYSPSLAYSPSSPR
ISPSSPYSASSPNYSPTSPSYSPTSPSYTPPSPTYSPSSPPYSVASPDYTPSSPPYSPSA
GYSPSAPGYSPSSTSQYTPQFSNKDKGSTR
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcggtttccttactctccggcggaagtcgccaaggtgcggacggttcagttc
ggcatcctcagtcccgacgagatccggcagatgtccgtcgtgcagattgagcacggcgag
acgatggaccgcggaaagcccaagcccgcggggcttagtgatccccggcttggtaccatc
gaccggaagttgaagtgcgagacgtgctcggcgaacatggcggagtgccccggtcacttt
ggtcacctggagctcgccaagccgatgttccatatcgggttcatgaagacggtccttgct
atactgcggtgcgtctgcttcaattgctcgcacattctcgccgatgaggaggatcatcgg
ttcaagcaagccttgaaaatcagaaatccaaaagctcgactgaagaaagttttggattgc
tgtaaaagcaaacaaaaatgtgaaggtggcgatgacatcgatgaggatcaaggacaggat
ttagaagatgccccaaagaagaaaaaacgtgggggctgtggtgctatgcaaccaaaaata
acaattgaaggtatgaagataattgccgaatacaaggttcctagaaagaaatctgatgaa
caggagcaaatgctgcctgaaccagttgaaagaaaacaacagctatctgctgaaagggtt
ttgaatgtcctgaaacgaattagcgatgaagattgcttacttctggggttgaatccgcag
tatgctcgccctgattggatgattttacaggtccttcccattccgcctcctcctgtgagg
ccgtctgtgatgatggatacttcttcacgcagtgaggatgatttaactcatcagctggca
atgatcataaggcataatgagaatctcaggaggcaggaaagaaatggagctcctgcacat
ataatttcagagtttgctgagttattgcagtttcacgttgcaacatattttgacaatgag
ctacctggtcagcctagggctacacaaagatccggaaggcctattaaatctatttgcagt
agacttaaggctaaggagggccggattagagggaacttgatggggaagcgtgtagatttt
tctgctcgtactgtcatcactcctgatccaactattaacattgatgaacttggggtgccg
tggagtattgctcttaatatgacatatcctgaaactgttactccttacaacattgaacgg
ttgaaagaacttgttgagaatggacctcatccaccacctggaaaaactggggcaaaatac
atcattagggaagatggacagcgagttgatctgcgatatttgagaaagagtagtgatcac
catcttgaattggggtataaggtggagcggcatttgatagatggagactttgtccttttc
aatcggcaacccagtctacacaaaatgtctatcatgggacataggataaaaattatgcct
tactctaccttccgtctaaatttatcagtgacatcaccatataatgctgattttgatggg
gatgaaatgaacatgcatgtacctcagtcttttgaaactagagcagaagtcttggagttg
atgatggtaccaaagtgtattgtttcaccacaatccaatcggccagtcatgggtattgtg
caggatacacttcttgggtgtaggaagattacaaagcgtgataccttcatagaaaaggat
gtgttcatgaacattttgatgtggtgggaggattttgctggaaagatacctgctcctgcc
attttgaagcctagacctttgtggacaggcaaacaagtatttaaccttataattccaaag
cagataaatttgattaggtactcagcatggcattcagaatcagaaacgggatttattacc
cctggagacacttgtgtccgaatagagaagggagaacttctctcggggaccctctgtaag
aaaaccatgggcacatcatctggaagtcttattcatgttatctgggaagaggtgggtcca
gatgcagcacgcaagtttttggggcatactcagtggcttgttaattattggcttctgcaa
aatgcttttagcattggtattggggataccattgccgatgcttccactatggaaaagatt
aatgagacgatctctaaagcaaagaatgaggtgaaagagcttatcaaggcagcacaggag
aaacagttggaagctgaacctgggcgaaccatgatggagtcatttgagaatagagtcaat
caggtgttgaacaaagctcgtgatgatgctggcagtagtgctcagaggagcttatctgaa
agtaataacctgaaagcaatggtcactgcagggtctaaaggaagttttattaatatttca
cagatgactgcttgtgttggtcaacagaatgtggagggaaagcgaattccttttggtttc
attgatcgcacactgccacattttactaaagatgattatgggcctgaaagtcgtggtttt
gtggagaactcctatcttcgtgggctgactcctcaggaattctttttccatgctatgggt
ggtagggaaggtttgattgatactgcagtcaaaacttcagagactggttacatacagagg
cgtcttgtaaaagctatggaggacatcatggtcaaatatgacggtacagtcaggaactcg
ttaggagatgtgattcagtttctttatggggaagatggtatggatgctgtttggattgaa
tcacagaagcttgattcattaaaaatgaaaaaggcagagtttgataaggtcttcaggttt
gagtttgatgatgaaaattgggatccaagttatttgcaacctgattttgtggaagacttg
aaaaccattaaagagcttcaggatgttttccatgcagaagttcagaagcttgaagcagat
aggcggcagctcgccacagagattgctaccactggggacaactcatggccaatgccggtg
aatctcaaaagacttatttggaatgcacaaaagacgtttaaggttgacctaagaagacca
tctgatatgcaccctatggagattgttgaagctgttgacaagcttcaggagaggctgaag
gttgtacctggtgaggatgcaatgagtatggaggctcaaaagaatgctactctttttttc
aatatactccttagaagcacatttgcaagcaagcgtgtgtcgaaagagtataggcttaca
cgtgaagcatttgactgggtgattggtgagattgagtctcgctttctgcagtcacttgtt
gcaccgggtgagatgattggctgcgtagcagcacaatcaataggtgaaccagcaactcag
atgacgttaaatacattccattatgctggtgtgagtgcaaaaaatgttacacttggtgtg
cctcgcctccgagaaatcataaatgttgccaagaaaatcaaaactccatccctgtctgtg
tatctcaaacctgaggtcagcaagaccaaggagaaggccaaaaatgtgcagtgtgcctta
gagtacactactcttcgaagtgtgactcaggcaacagaagtatggtatgatccggatcca
atgaccacaattattgaagaggatattgattttgtgaggtcatactatgaaatgccagat
gaagaggttgcaccagaaaagatttctccttggttgcttaggatagaactgaatagggaa
atgatggtggataagaaactgagtatggcagatatcgcagaaaaaataaacctcgagttt
gatgacgatttgacatgcatcttcaatgatgataatgcggaaaagcttatcctccgtata
cgaattatgaatgacgatgcccccaaaggtgaactgcaagatgagtctgcagaagatgat
gtcttcctcaagaaaattgaaagcaacatgttaacagaaatggcccttcgtggtatccca
gacatcaataaagtgtttatcaagtctggcaaggtaagtaagttcgatgaaaatgaagga
tttaaacctgaagttgaatggatgctggatacggagggtgtcaatttattggcagttatg
tgtcatgaggatgtggatgcaacaagaacaacaagtaaccacttgatagaggtgattgaa
gtccttggaatagaagctgtgagacgtgcgctgctggatgagttgagagttgttatatca
tttgatgggtcttatgtgaattatagacatcttgctattctatgcgatactatgacttac
cgcgggcatctaatggccatcactcgtcatggtattaaccgtaatgacacaggacctctg
atgaggtgttcatttgaggaaactgtggacattcttttggatgcagcagtgtatgccgag
tcagaccatctaagaggtgttacagagaatatcatgcttggacagttggcccccattgga
acggggggctgtgctttgtatctgaatgatcaaatgctacagcaagctattgaacttcag
ctccctagttacatggaaggcatggactttggcatgactccatccagatcacccatcact
ggaaccccattccatgaaggcatgatgtccccaagctacttgtttagcccaaatatccgc
gcatcaccaattacagatgcacagttctctccatatgttggtggcatggctttctcacca
tcttcgtcaccaggatacagtccatcatctcctggatacagtccatcctctcctggatat
agtcctacatcccctggttatagtccaacttctcctgggtacagtcctacttcccctggc
tatagtcccacttctccaacatacagtcccagctctcctggttatagtccaacaagtcct
gcatattcacccaccagtccatcatactctcccacctcacccagttatagccctacatct
ccaagttacagccccacttcgccaagctatagccccacatccccaagttatagccccact
tcaccaagttatagtcctacttccccagcttatagtcctacttctcctgcatatagtcca
acttcgccttcatatagtccaacatcaccttcttacagtcctacctcacctacttacagt
ccaacatcaccttcttatagccctacttctcctgcctacagtccaacctcacctggttat
agccccacttcaccaagctacagtccaacatcgccaagctacagcccaacttctccaagc
tacaatccaccttcagctcgttacagtccatccctggcatattcaccaagcagtccaagg
atatctccctccagcccctacagtgcatcatctccaaattacagccctacatcaccatca
tattcacctacatctccatcatacacaccaccaagtcctacgtatagccccagcagccct
ccttattctgttgccagtccagactacactccaagttctccaccttacagtccgagtgct
ggttactccccaagtgcacctggatattctccgtcatcgaccagccagtacacaccacag
ttcagtaataaggacaagggaagcactcgttga
DBGET
integrated database retrieval system
