Neurospora crassa: NCU02103
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Entry
NCU02103 CDS
T01034
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ncr
Neurospora crassa
Pathway
ncr03020
RNA polymerase
ncr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCU02103
09124 Replication and repair
03420 Nucleotide excision repair
NCU02103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncr03021
]
NCU02103
03400 DNA repair and recombination proteins [BR:
ncr03400
]
NCU02103
Enzymes [BR:
ncr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCU02103
Transcription machinery [BR:
ncr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
NCU02103
DNA repair and recombination proteins [BR:
ncr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
NCU02103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
zf-C4pol
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
3880246
NCBI-ProteinID:
XP_964097
UniProt:
Q7SDN0
LinkDB
All DBs
Position
I:1270901..1277586
Genome browser
AA seq
1761 aa
AA seq
DB search
MANLYFAHSSAPLRTIKEIQFGLLSPEEIKGMSVAHIVYPETMDETRTKPRDGGLNDPLL
GSVDRQFKCKTCGENMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNCSKVLADRN
DKEFAAAMRIRDPKVRFNRVWAVCKKKRRCENEVVKKSDDDEFNPLADAKGELPGHGGCG
NDHPTVRQQALTLYAQFDTKDEEGVKSKEKKIITPEMALNILHNMTESDMIDIGINISQA
RPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVRQAIQEGSPA
HIINDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVD
FSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQNGPNEHPGAKYVI
RSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYS
TFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQD
TLAGAYKLCRRDVFLTKEEVMNIMLWVPEWDGIIPVPAILKPRPRWTGKQIISMVVPKII
NLKNIDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIVHLCYNELGPSGAMDFL
NGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKQLTDMATNNQLEPLP
GMNIRETFENKVSKALNTARDKAGTTTESSLKDINNAVTMALSGSKGSSINISQMTALVG
QQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLID
TAVKTAETGYIQRRLVKALEDSAAQYDGTVRNSLGDIIQFVYGEDGLDGIAIENQPVDHF
TISNKAFDKRYRLDVMDEEVSSGELEALEYGKELASDPTVQELLDQEYEQLSVDRHMLRE
IQRTKGNNDTKMQLPLNIIRIIDTAKKLFKVDETARSDLTPKDVIPAVKAMLDRMIVVRG
DDPISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGELENRWSRSMVSPGE
MVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVASNIKTPSMMVYLDS
KAATQEEAKKMRSAVEHTSLRSVTAVTEIYYDPDITSTNIPEDYDLVESYFLIPDQSGDE
PDPIENQSRWLLRITLDRQKMLDKGLRVEDVAHRIKEVYKKDVAVVFSDNNAEEMVIRIR
VIKADDDKDEDGNKIIEDDVMLKRLEKHLLDGCTLRGVEGIERAFLNKGVKLIEAKDGSM
KHSKVDDECQEWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVFGIEGARAALMHEL
TAVLAFDGSYVNHRHLALLCDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEA
AAVGELDDCRGISENVMLGQMAPMGTGAFDVFLDPKMLETVISDNSRMGLMPGMTVKGSQ
LDGAATPYDTGSPMADSGFLGSYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVGGYGSGT
SYSSATSPRATSPFTPTSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPSF
SPTSPMLRPGSPTSPSYSPTSPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPA
SPAFQATSPSYSPASPTWSPTSPDAYSPTSPSFQRSPGQQLSPTSPTGYSPTSPQYSPRT
PGRNNSGGNGDQYSPTSPSND
NT seq
5286 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctatactttgcgcactcgagtgcgcccttgcggaccatcaaggaaatccag
tttggtctgctgtcgcccgaggagatcaagggcatgagtgtggcccacatcgtctaccca
gagaccatggacgagaccaggacaaaaccccgcgacggcggtctcaacgaccctctcctg
ggctccgtagatcgtcagttcaagtgcaagacgtgcggcgagaacatgtccgagtgcccc
ggccatttcggtcacatcgagctggcccgacccgtctaccatccgggcttcatcaagcgg
gtgaagaagatgttggagattgtctgccacaactgcagcaaggttcttgctgacagaaat
gacaaagagttcgcggccgccatgaggatccgcgatcccaaggtccgcttcaaccgagta
tgggctgtgtgcaagaaaaagaggagatgtgaaaacgaggtagtcaagaagagcgacgat
gacgagttcaaccctcttgccgacgccaagggcgagctccccggccacggcggctgcggc
aacgatcaccccaccgtccgccagcaggccctcaccctctatgcccagttcgataccaag
gacgaggagggcgtcaagagcaaggagaagaagatcatcacccccgagatggcactcaac
attttgcacaacatgaccgagtctgacatgatcgacatcggcatcaacatctctcaagct
cggcctgagtggatgatcatcactgttctgcctgttccgccccctccagtccgccccagt
atttccatggacggtaccggcaccggtatgcggaacgaagatgatttgacctacaagctc
ggcgatatcattcgagcaaacggcaacgttcgccaggccatccaggagggttctccggct
cacattatcaacgatttcgagaacctcctccagtaccacgttgctacctacatggacaac
gatattgctggtcaaccacaagctctgcaaaagagcggtcgtcccgtcaaggccattcgt
gcccgtctcaagggcaaggagggtcgtctgcgtggtaacttgatgggcaagcgtgtcgat
ttctctgcccgtacagtcatcacaggcgatgccaacatctcgctggatgaagtcggtgtg
ccccgtagcatcgcgcgtacgcttacctatcccgagactgtgacgccctacaatattggc
aaactcacccaatacgtccagaacggccctaacgagcatccgggtgccaagtacgttatc
cgctcagatggcagccgtgtcgatctacgccatcagaggcggacaggtccgctacagctg
gaatatggctggaaggttgagcgccatctcatcgacggtgattacatcatcttcaaccgt
cagccctctttgcacaaggaatccatgatgggtcatcgtgtcaaggtcatgccctactcg
accttcagacttaacctttctgtcacatctccttacaacgccgatttcgacggtgatgaa
atgaaccttcacgttcctcaaaccgaagaaactcgtgctgaagtcaaggagctttgcatg
gttcctctcaacatcgtctcgccgcagcgtaacggtccgctcatgggtatcgtgcaggac
actttggctggtgcttacaagctttgtcgtcgtgacgtcttccttaccaaggaggaggtc
atgaacattatgctctgggtccccgagtgggacggcatcattcctgtccctgcaatcctc
aagcctcgtcctcgctggactggtaagcaaatcattagcatggttgttcccaagatcata
aacctcaagaacatcgacgaggatgatggtgagtgccctcttaaggacaagggcattttg
atccaacaaggtgaggtgattttcggcttgatgacgaagaagattgtgggtgctgctagt
ggcggtatcgtccatctctgctacaacgagctgggtcctagcggtgctatggatttcctc
aacggctgccagagagtcgtcaactactggctccttcacaatggtcacagcattggtatt
ggtgacactattcccgacgccgcgaccatcgccaaggtccagacgcacattgacgatgcc
aaggcagaagtcaagcagctcacagatatggccaccaacaatcagcttgagccattgccc
ggtatgaacatccgtgagaccttcgaaaacaaggtctccaaggctctcaacacggcccgt
gacaaggccggtactaccactgagagcagtttgaaggatatcaacaacgccgtaaccatg
gctctgtctggttccaagggttcctccatcaacatttcccagatgactgccttggtcggt
cagcagattgtcgaaggcaagcgtattcctttcggcttcaagtaccgcacactgccacat
ttcacaaaggatgattactcgcccgaagcccgtggtttcgtcgagaactcgtaccttcgt
ggtcttactccttcagagtttttcttccacgccatggctggtagagaaggtttgatcgat
accgctgtcaagacagccgaaactggttacattcagcgtcgtttggtcaaggcccttgaa
gattcggctgcgcagtacgatggtactgttcgcaactcgctgggtgatatcatccagttc
gtctacggtgaagatggtctcgacggtattgccatcgagaaccagcctgtcgaccacttc
acgatatccaacaaggctttcgacaagcgttatcgtctcgatgtcatggacgaggaggtt
tcctcgggcgagcttgaggcgctggaatacggaaaggagcttgctagtgaccccactgtt
caggagcttcttgaccaggagtacgaacagctttcggtcgatcgccacatgcttcgcgag
atccagcgcacaaaaggcaacaatgacacgaagatgcagctcccgcttaacatcattcgt
attattgatactgccaagaagctgttcaaggtcgatgagaccgctcgcagtgaccttacc
cccaaggatgtcattcctgcagttaaggccatgcttgatcgcatgatcgttgtcagagga
gacgatcctatctccaaggaggcagactacaacgccacgatcctgttcaaggcccagctt
cggtctcgcttggcgttcaagcgtcttgctgtccaagataggatcaacaaattggccttc
aaccacatcctcggcgagctcgagaaccgttggtcgaggtcgatggtttctccgggtgaa
atggttggtgtgttggctgcccagtctatcggtgaacccgccacccagatgacactcaac
actttccatttcgccggtgtgtcctccaagaacgtcacccttggtgtgccgcgtctcaag
gaaattcttaacgttgcttcgaacatcaagactccttccatgatggtctatctcgactcc
aaggcagcgacccaggaggaggccaagaagatgcgcagtgctgtcgagcacacgagtctt
cgctccgttacggctgtcactgaaatctactatgatcccgatatcacatcgaccaacatc
cccgaggattacgatttggtcgagtcttacttcctcattcccgatcagagcggcgacgag
ccagatccgattgagaaccagtcccgttggcttctgagaatcactctcgatcgtcagaag
atgctcgataagggtctccgcgttgaggacgttgctcaccgcatcaaggaggtttacaag
aaggatgttgcggttgtcttctccgacaacaacgctgaagagatggtcatccgtatccgt
gttatcaaggcggacgatgacaaggacgaagatggtaataagatcatcgaggacgatgtg
atgctcaagcgtcttgagaagcatctcctggacggctgcacacttcgtggtgtcgagggc
attgagcgtgccttcttgaacaagggtgttaagctgatcgaggccaaggatggttccatg
aagcactccaaggtggacgatgagtgccaagagtggtaccttgatacacaaggtacctct
cttcgtgaggtcttgactgtcgagggtgttgataccaagcgcaccactaccaacgacttg
tggcaggttgtcgatgtcttcggtatcgagggagctcgtgctgctctgatgcacgagttg
acggctgtgctggctttcgacggttcgtacgtcaaccatcgtcacttggcgcttctttgc
gatgtgatgacatacaggggcagtatcgccgccgtcacacgtcacggtatcaaccgcgct
gatactggtgcgctcatgcgttgctctttcgaggagactgtcgaaattctcctggaagct
gccgccgtcggtgagcttgatgactgccgtggtatctcggagaacgttatgttaggccag
atggctcccatgggtactggtgcctttgacgttttcctcgatcccaagatgttggagacc
gtcatctctgacaactctcgcatgggtctcatgccgggcatgaccgtgaagggcagtcag
ctggatggcgcggctacgccttatgatacaggctccccgatggccgacagtgggttcctt
ggaagttattcgcctaccatgggcaacttctctcctatccagggcgctggatcggacagc
ccgacgaacaacggctttggcaccgactacggtggcgttggcggatacggttctggtact
tcctactcttcggctactagccctcgtgccaccagccccttcacacccacgtcaccgttc
agctatggcgggtactcgccatcgtcgcccgcggctggctactcgcccagctcacctctc
ctcgactctgctggtcgttttgcttccagcccacaattcagtccctcgtcgccgtcgttc
tcgccaacttcgccgatgctgcgccctggaagcccgaccagcccgagctacagccctacc
tccccgagttactcgccggcatcgccagctgccgccaggtactcgcccacctcccccgcc
caacaattctctccgacgtcgccctcatactcccccacgagtccgagctacagcccggcc
tcgcccgctttccaggctacctcgccaagctactctccggcgtcgcctacctggtcgcca
acctcgccggacgcttactcgcccacgagcccgtcgttccagcggtcgcctggtcagcag
ctgtcccctactagcccaacgggttactcgccgacgtcgccgcagtactcgccgcggacg
ccgggacgtaataactcggggggcaacggggatcaatattctcccacttcgccatcgaat
gattaa
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