Novosphingobium decolorationis: HT578_15140
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Entry
HT578_15140 CDS
T07993
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr03030
DNA replication
ndr03410
Base excision repair
ndr03420
Nucleotide excision repair
ndr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HT578_15140 (polA)
03410 Base excision repair
HT578_15140 (polA)
03420 Nucleotide excision repair
HT578_15140 (polA)
03440 Homologous recombination
HT578_15140 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ndr03032
]
HT578_15140 (polA)
03400 DNA repair and recombination proteins [BR:
ndr03400
]
HT578_15140 (polA)
Enzymes [BR:
ndr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HT578_15140 (polA)
DNA replication proteins [BR:
ndr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HT578_15140 (polA)
DNA repair and recombination proteins [BR:
ndr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HT578_15140 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HT578_15140 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DprA_N
DNA_pol_lambd_f
Lycopene_cycl
Motif
Other DBs
NCBI-ProteinID:
QVM84838
LinkDB
All DBs
Position
3283433..3286273
Genome browser
AA seq
946 aa
AA seq
DB search
MEPKQHLYLVDGSAYIFRAYHRLPPLTNPEGTPVGAVYGYTTMLWKLAEDLDKAEGPTHM
AVILDAGSKSFRNDIYEDYKANRPPPPEDLVPQFPLIRDATRAFSLPCIEEQGYEADDLI
ASYARAAAREGWDVTIVSSDKDLMQLVGTCPEGGGKVDMLDTMKSLRIDIPEVEEKFGVT
PDKVGDVLALMGDAVDNVPGVFGVGPKTATKLIQEHGDLESVLAAAPDMKKSKLKERLIE
QAEQARLSRVLVALKEDCALPMALDEVKLNSIPPEPLAEFLGKHGFTSLLKRLETGNGSP
SKATDLNPAKAQNAGAGPAEGAARQSLPEMPAVDYAAYECVQTQEALEAWVQKAQAAHIL
AVDTETSALEAMQADLVGVSLAIGPNEACYIPLGHGGSDMFAEKPPQVDMDTAIALLKPL
LEDDAVLKIGQNIKYDINVLARYGIMVAPIDDTMIESFCLDAGRGTDGVGGGHGMDELSQ
RHLGHTPMAFKDVCGTGKKAIPFGEVPLDKATHYAAEDADVTWRLHSLLKPRLSEEGGTR
IYEKVDRPLIPVVAQMERHGIKVDREKLAGLSAQFAETIGALEKEIHEAAGQEFTIGSPK
QLGEILFDKLGYKGGKKGKSGQYSTDQSVLERLAEEGAEVATKVLEWRQLSKLRSTYTEA
LQAAINPKTGRVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRDCFVAEEGNVLLA
ADYSQIELRLAAHMADVPSLKEAFEKGEDIHARTATELFGEVTRETRGRAKTINFAILYG
ISRWGLAGRLGTDADEAQAMIDRYFERFPGIQKYIVSTLEGVRGRGYSETLFARKTWFPR
IISKNGNERQGSERAAINAPIQGTCADIIKRAMARMTPALEDAGLGHVRMLLQVHDELVF
ELPEGDVEAASKVIEKVMAEAAGPAVELTVPLGVEIGSGPSWGAAH
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggagccaaagcagcatctctacctcgtcgacggttcggcctacatcttccgtgcctac
caccgtcttcccccgctcacgaacccggaaggcacgcccgtgggcgcggtctacggctac
accacgatgctgtggaagctggccgaggacctcgacaaggccgaggggcccacgcacatg
gcggtgatcctcgatgcgggaagcaagtcgttccgcaacgacatctacgaggactacaag
gccaaccgtcccccgccgcccgaggatctggtgccccagttcccgttgatccgcgatgca
acgcgcgccttctcgctgccgtgcatcgaagagcagggctacgaggcggacgacctcatc
gcctcctacgcgcgcgccgcggcgcgggagggctgggacgtcaccatcgtgtcttcggac
aaggacctcatgcagctggtcggcacctgccccgaaggcggcggcaaggtcgacatgctc
gacacgatgaagagcctgcgcatcgacatacccgaggtcgaggagaagttcggcgtcacc
cccgacaaggtgggcgacgtgctcgcgctcatgggcgatgcggtcgacaacgtgccgggt
gtcttcggagtcggccccaagaccgcgaccaagctcatccaggagcatggcgacctggaa
agcgtgctggctgctgcgccggacatgaagaagtccaagctcaaggagcggttgatcgag
caggccgagcaggcccgcctcagccgtgttcttgtcgcgctcaaggaagactgcgcgctg
ccgatggcgctcgacgaggtgaagctcaatagcatcccgcccgagccgctcgccgagttc
ctcggcaagcatggcttcaccagcctcctgaagcgtctcgagaccggcaacggcagcccc
tccaaggcgaccgatctcaatccggccaaggcgcagaatgccggggccgggccggccgag
ggcgctgcgcgccagtcgctgcccgagatgcctgcggtggactacgcggcctacgaatgc
gttcagacgcaagaggcgctcgaagcctgggtgcagaaggcgcaggccgcgcatatcctg
gcggtggacaccgagacctcggcgctggaggcgatgcaggctgaccttgtcggcgtgagc
ctggccatcgggcccaacgaggcctgctacatcccgcttggccacggcggcagcgacatg
ttcgccgagaagccgccgcaggtggacatggacaccgccatcgcgctcctcaagccgctg
ctggaggacgatgcggtcctcaagatcggccagaacatcaagtacgacatcaacgtgctc
gcccgctatgggatcatggtcgcgcccatcgatgacaccatgatcgagagcttctgcctc
gatgccgggcggggcaccgacggcgtgggcggtggccacgggatggacgagctttcgcag
cgccacctcggccacacgccgatggccttcaaggacgtgtgcggcacgggcaagaaggcg
atccccttcggcgaggtcccgctcgacaaggcgactcattacgccgccgaggacgcggac
gtgacctggcgcctccacagcctgctgaagccgcgcctttccgaggaaggcggcacgcgc
atctacgaaaaggtggatcgcccgctgatcccggtggtcgcccagatggagcgccacggg
atcaaggttgaccgtgagaagctggccgggctctcggcccagttcgccgagaccatcggt
gcgctggaaaaggaaatccacgaggcagcgggccaggaattcaccatcggcagccccaag
cagctgggcgagatcctgttcgacaagctgggctacaagggcggcaagaagggcaagtcg
ggccagtactcgaccgaccagtcggtgctcgaacgcctcgccgaagaaggcgcggaagtc
gcgaccaaggtgctggaatggcgccagctttccaagctgcgctcgacctacaccgaggcg
ctgcaggccgcaatcaacccgaagacgggccgcgtccacaccagctacagccttgtcggc
gcgcagacgggacgcctgtcctcgaccgatccgaacctgcagaacatcccgatccgcacc
gagattggccgtcagatccgcgattgcttcgtcgccgaggagggcaatgtcctcctcgcg
gccgactattcgcagatcgagctgcgtcttgccgcgcacatggccgacgttcccagcctg
aaggaagccttcgagaagggcgaggacatccacgcgcgcaccgcgaccgagctgttcggg
gaagtcacccgcgagacgcgtgggcgggccaagacgatcaacttcgccatcctctacggc
atctcgcgctggggcctcgctgggcgtctgggcaccgatgccgatgaggctcaggcgatg
atcgaccgctatttcgagcgattcccgggcatccagaagtacatcgtctcgacgctggaa
ggcgtgcgcgggcggggttattccgagacgctctttgctcgcaagacctggttcccgcgc
atcatctccaagaacgggaacgagcgccagggctccgagcgcgccgcgatcaacgcgccg
atccagggcacctgcgccgacatcatcaagcgcgccatggcgcgcatgaccccggcactg
gaagacgcgggccttggccatgtgcgcatgctgctgcaggtgcacgacgaactcgtcttc
gaactgcccgaaggcgacgtcgaagctgcctcgaaggtcatcgagaaggtcatggccgaa
gccgcaggtccggccgtggaactgaccgtgccgctgggcgtggagatcggctcgggtccg
agctggggcgcggcgcactaa
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