Nothobranchius furzeri (turquoise killifish): 107377398
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Entry
107377398 CDS
T05163
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03020
RNA polymerase
nfu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107377398 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
107377398 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfu03021
]
107377398 (polr2a)
03400 DNA repair and recombination proteins [BR:
nfu03400
]
107377398 (polr2a)
Enzymes [BR:
nfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107377398 (polr2a)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107377398 (polr2a)
DNA repair and recombination proteins [BR:
nfu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107377398 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
107377398
NCBI-ProteinID:
XP_015802426
UniProt:
A0A8C6KC41
LinkDB
All DBs
Position
sgr04:36498202..36510259
Genome browser
AA seq
1969 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKILRCVCFFCSKLLVDAN
NPKIKEILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQVFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSHKAFEKKFKFDCTNERALRRILQEDVVKDVQTNAHVQSVLEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVDELSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMTEEFRLSMEAFDWLLGEIETKFNQSIVH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSSMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGPMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDESDEENN
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcatcatcagcccagatgaacttaaacgcatgtcggtcactgaagggggaataaag
taccctgaaaccacagagggaggacgtcctaaacttggtggccttatggatccaaggcaa
ggggtgatagaacgcactggtagatgtcaaacatgtgcaggcaacatgacagaatgcccg
ggtcactttgggcacatagagctggcaaaaccagtcttccatgtcgggtttatatcgaag
ataatgaagatccttcgatgcgtctgcttcttttgctccaagttgttggtggatgcaaac
aatcccaagatcaaagaaatcctggtgaagtctaaagggcagccaaggaagcgactgact
catgtttacgagctgtgcaaaggcaaaaacatatgtgaaggaggtgaggagatggacaac
aaatttggaatggagcagcaggagactgaggaggacatcaccaaggaaaagggccatggt
ggctgtgggcgctaccagcctcgcatcagacgctccggcctggagctgtacgccgagtgg
aagcatgttaacgaggactcgcaggagaagaagatcctgctaagtcctgagcgcgtgcac
gaaatcttcaagcgtatctcagatgaagaagacatcatcttgggcatggaccccaagttt
gcccgaccagagtggatgattgtcactgtgttgcctgtgcctccgctggctgtgaggcct
gctgtggtcatgcagggatctgctcgcaaccaggacgacttgacccataagttagccgac
atcgtcaagatcaacaatcagctgaaacgcaacgagcagagcggtgcagccgctcacgtg
atcgccgaggatgtgaagctacttcagtttcacgtggccacaatggtcgacaacgaattg
ccgggcctgccaagggccatgcaaaagtccggtcgccctctcaaatccttaaagcagcgt
ctaaaaggaaaggaaggaagggtacgaggtaacctgatgggtaaacgtgtggacttctca
gccagaactgtcatcaccccagaccccaacctgcaaatcgaccaagtaggtgtgcctcgc
tccatcgcggccaacatgaccttccctgagatcgtcaccccctttaatatcgacagattg
caagagctggtgcgaagagggaacagccagtaccctggagccaaatacatcattcgcgac
aacggagacagaatcgacctgcgatttcaccccaaaccaagtgaccttcatctgcagatc
ggctacaaggttgaaagacacatgtgcgacggggacattgtcatcttcaaccgacagcct
acactacataaaatgtccatgatgggtcacagggttcggatcctgccgtggtccacgttt
cggctcaacctcagtgtcaccaccccgtacaacgccgactttgacggcgatgagatgaac
ctccacctgcctcagtccctggagacgagggcagagatccaggagctggccatggtgcca
cgtatgattgtcacaccccagtccaacaggcccgtcatgggtatcgtacaggacactctc
accgctgtccgcaaattcaccaaacgagacgtcttcctagagagaggtgaagttatgaac
ctcctcatgttcctctccacctgggacgggaagatgccccagcccgccatcctcaagccc
cgccctctgtggacaggcaagcaggtcttcagcctcatcattccaggacacatcaatgtg
atccgcacacacagcacgcaccccgacgacgaggacagcgggccttacaaacacatctcc
cccggcgacaccaaggtgatagtggagaacggggagctgatcatgggcatcctgtgtaag
aagtccctgggaacctctgctgggtccctcgtccacatctcctacctggagatgggccat
gacatcaccagactcttctactccaacatccagacggtggtcaacaattggctgctcatc
gagggtcattccattggtatcggtgattccattgccgatgctaagacctacctggacatt
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagctcacaac
aacgagctggagcccactcctggtaacacgctgaggcagacctttgagaaccaggtcaat
cgtatcctcaacgacgctcgagacaaaacgggatcctcggcgcagaagtcgctgtccgag
tacaacaacttcaagtccatggtggtggccggctccaaagggtccaagattaacatctca
caggttattgctgtggtgggccagcagaacgtggaaggtaagcgaatcccgttcggcttc
aagcaccggactctgcctcacttcatcaaggatgactacggtccagagagcagagggttt
gtggagaactcctacctggctggactcacgcccacagagttcttcttccacgccatggga
ggcagagagggtctgatcgatacggctgtaaaaacggccgagacaggatacatccagcgt
cgtctcattaaatctatggagtctgtgatggttaagtacgacgcaacggtgcgaaactcc
atcaaccaggtggtccagctccgctacggcgaggacggtctggcaggagagaatgtagag
ttccagaatctagccacgttgaagccctcgcacaaggccttcgagaagaagttcaagttt
gattgcaccaacgagcgcgctctgaggcggattctgcaggaggacgtggtgaaggacgtg
cagaccaacgcacacgtgcagagcgtcctggagagggagtttgagaagatgaaggaggac
cgggagatcctgagagctattttccccaccggcgacagtaaggtggtgctgccgtgtaac
ttggccaggatgatctggaacgctcaaaagatctttcgaatcaaccctcgaaccccaaca
gacctgaatcctctcagagtggttgagggtgttgacgagctgagtaagaagctgatcatt
gtgaatggcgatgaccctctgagtagacaggcccaggagaacgccacgctgctctttaac
atccacctgcgctccacgctctgctccagacgcatgacggaggagttccggctctccatg
gaggcgttcgattggctgctgggagagatcgagaccaagttcaaccagtccatcgttcat
cccggtgaaatggtgggcgctctggctgctcagtccctgggagagccggccactcagatg
acactgaacactttccactacgccggtgtgtcggctaagaacgtcacgctcggcgtgcct
cgtctcaaggagttgatcaacatctccaagaggcctaagacgccgtcgctgaccgttttc
ctgctgggtcaggcggcgcgcgacgctgagagggccaaggacatcctctgtcggctggag
cacaccacgctgcgaaaagtgaccgcaaacacggccatctattacgaccccaacccacag
aacaccgtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgacttt
gatgtgactcgcatctcaccgtggctgctgcgcatcgagctggaccgcaaacacatgact
gaccgcaagctgaccatggagcagatcgcagagaagatcaacgccggttttggcgatgat
ctgaactgcatcttcaacgacgacaacgccgaaaagctggtgctgcgaattagaatcatg
aacagtgacgagaacaagttccaagaggatgaggaggtggtggacaagatggacgacgac
gtgttcctgaggtgcatagagtccaacatgctgacggacatgaccctgcagggcatcgag
cagatcagcaaggtgtacatgcacctgcctcagacggacaacaagaagaagatcatcatc
acagaagacggagagttcaaggccctgcaggagtggatccttgagacagacggtgtgagc
ctcatgagggttctcagcgagaaggacgtggatcccgtcagaaccacctccaacgacatt
gtggagatcttcacggttttggggattgaagctgtgcgcaaggctctggagagggagttg
tatcatgtcatctcctttgacggttcctacgtcaactaccgtcatttggctctgctctgc
gacacaatgacctgccgcggtcacctgatggccatcacgcgtcacggcatcaaccggcag
gacacggggccgctcatgaagtgttcttttgaggagacggtggacgtgctgatggaggct
tcctcccatggggagtgtgacccgatgaagggcgtgtctgagaacatcatgctaggtcag
ctcgcccctgcgggaacgggctgcttcgacctgctgctggatgctgagaaatgcaaatac
ggcatggagatcccgaccaacatccctggcatcagcgtggctgggcccactggaatgttc
ttcggttctgtgccaagtccgatgagcagcatgtctcctgccatgactccgtggaacaca
ggggctaccccggcctacggcgcctggtcccccagtgttggaagcggcatgacccccgga
gcagcaggcttctcccccagcgcagcatcagatgctagcggcttctctccagggtactcc
ccagcctggtctcctacgcccgggtctcccggatctccaggacctgccagtccctacatc
ccttcaccaggtggacccatgtcaccaaactactcacctacctcccccgcctacgagcct
cggtctccggggggctacaccccccaaagcccgggctactccccgacatcaccttcttac
tcccccacctccccctcttactctcccaccagccccaattacagtcccacgtctccttcc
tactcccccacctcacccagttactccccaacctctccttcgtactcacccacgtctcct
tcttactccccaacatctccgtcttactcccctacctcgcctagttactcccccacctcc
ccctcctactcccccacctctccgagttacagcccaacgtcgccaagctacagcccaacg
tcgccaagctactcccccacctccccctcatactcgcctacctctccttcttactctccc
acgtctccctcctattcgcccacctccccctcctactcccccacgtccccctcatactcg
ccgaccagcccaagctacagccccacgtcgccaaactacaccccgacgtcccccagttac
tcccctacctcaccctcatactcccctacgtcgccctcttattcccccacctctccgaac
tacaccccgaccagcccaaactactcccccacctctccctcgtactcccccacttctccg
tcctactccccttccagtccacgctataccccccagtctccaacctacacaccgagctcg
ccgtcatacagccccagctccccctcttactccccaacctcacccaagtacaccccaacg
tctccctcctacagccccagctctcccgagtacacccccacctcccccaaatattccccc
acctcaccaaaatactccccgacgtcaccgaaatactcccccacttctcccacctactca
ccaacaactcccaaatacagccccacctcccccacttactctcccacctctcctacctac
acccccaccagtcccaagtactcccccacctccccaacttactccccaacttcgcctaag
tactcccccacatctcccacgtactctccgacgagccccaaaggctccacctacagcccc
acctccccaggctacagccccacctcccccacgtacagcccggccatcagccccgacgac
agcgacgagagcgatgaggagaacaactga
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integrated database retrieval system
