Candidatus Nitrososphaera gargensis: Ngar_c01550
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Entry
Ngar_c01550 CDS
T02305
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
nga
Candidatus Nitrososphaera gargensis
Pathway
nga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ngar_c01550 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nga03021
]
Ngar_c01550 (rpoB)
Enzymes [BR:
nga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ngar_c01550 (rpoB)
Transcription machinery [BR:
nga03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Ngar_c01550 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
FtrD-like
FYVE
Zn_Tnp_IS1595
OrfB_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AFU57104
UniProt:
K0ILI7
LinkDB
All DBs
Position
119060..122410
Genome browser
AA seq
1116 aa
AA seq
DB search
MIENSIEMWPIINDILRREGVARQHLNSYNEFMERGLQSIIDEVGEIEIETAEYPYKIKL
GKIKLQQPRIMELDGSITHVAPMEARLRNLTYASPVMLECSVVEDGKILESRFIHIGDMP
VMVKSNTCILHNLPESKLIEFGEDPRDPGGYFIINGSERVIVGLEDLSYNKIIVDAEEAT
GTLLYKAKVYSSIVGYRAKLELVMRPDGSIVTKIPGSPVDIPLITLIRALGLESDKDIAD
SVSLNETIQDELEPSFEKAGDVNTSRDAIVYISKRIAPGMLEEFQIKRAETLLDWGLLPH
IGKNPDNRHEKALFLGEAASKLIELKLGWIDADDKDHYGNKVIKFAGQMLADLFRTAFRN
LIRDMKYQLERSGQKRGINAVAAAVRPGIVSDKLNNAIATGNWGRGRVGVTQLLDRTNYM
STISHLRRIQSPLSRSQPNFEARDLHATHFGRICPAETPEGSNCGLVKNLALSAIISVNV
QSAEVTEKLYELGVQNVEDAREDLRESGTRVFVDGRLIGYVEKGEHLSDTLRSMRRSGKI
HPHVGIYLYSSQNENATKRLYISCNAGRVLRPLVVLRDGKPLVTNEVIEKVSKKFLSWND
LLYMGVIELVDANEEENCYVAIDPKKLEPKHTHLEIFPSAILGVGASIIPYPEHNQSPRN
TYESAMAKQSLGFSTPLMNASTYVRQHFMLYPQTPVVSTKAINLLGLEDRPTGQNAVVAV
LPFEGYNIEDAVVFNKSSVDRGLGRTFFYRIYEAEAKQYPGGMKDNFELPQPDANIRGYR
GEKAYRLLEQDGAIMHEAVVNGGDILIGRTSPPRFMEEYKEFEVKGPYRRDTSVGVRPSE
NGVVDTVIVTQSVEGGKMYKIRVRDMRIPEIGDKFASRHGQKGVVGMLVNQEDVPYTEDG
VVPDIMINPHAFPSRMTVGQFMESLGGKAASLRGRIVDGSAFLGEKGDDIKTAMEQYGFK
YTGKETMYDGRTGRKFPADVYIGVVYYQKLHHMVADKIHSRARGQVQMLTKQPTEGRARG
GGLRFGEMERDCLIAYGASMMLKDRLLEESDKAEVNVCERCGLLAYYDVKQRRYICRVCG
EKAKISSVVIAYAFKLLLQEMMSLNVAPRLLVKEKV
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgatagagaattctattgagatgtggcctattatcaacgacattttgcgaagggaaggc
gttgcaaggcagcacctgaattcttataacgaattcatggagcgcggactccagagcatc
atcgacgaagttggcgagatcgaaatcgagaccgcagaatacccgtacaagatcaagctg
ggcaagataaagctccaacagccaaggatcatggagcttgacggctctatcacacatgtt
gccccgatggaggcacgccttcgcaacctaacctatgcgtcgccggtcatgcttgaatgc
agcgtggtcgaggacggcaagatactggaatcgcgctttatccacatcggcgacatgcct
gtaatggtcaagtccaacacgtgcatcctgcacaacctgcctgagagcaagctgatcgag
tttggcgaagacccacgcgaccccggcggatatttcattatcaacggttctgagcgcgtc
atcgtaggcttggaagatctttcgtacaacaagataatcgttgacgccgaagaggcaacc
ggcaccctgctatacaaggccaaggtgtactcttcaatagtcggctacagggcgaaactt
gaactagtgatgcgcccagacggctccatagtgaccaagatccccggctcgcctgtagac
atacctcttatcacgctaatccgggcgcttggcctagagtcggacaaggacatcgcagac
tcggtctcgctaaacgagaccatccaagacgagctagagccctcatttgaaaaggccggc
gacgtgaacacgagcagggacgccatcgtgtatatcagcaagagaattgcgcccggcatg
ttggaggagttccagataaagagggccgaaacgctgcttgactggggcctcctgccgcac
attggcaagaacccagacaacaggcatgaaaaggcgctgttcttaggcgaagcggcaagc
aagctcattgagctcaagctgggctggatagacgctgacgataaggaccactatggcaac
aaggtgatcaagttcgccggccagatgcttgcagacctgttcaggacagcttttcgcaat
ttgatacgtgacatgaagtaccagctagagcgctcgggccaaaagcgcggcatcaacgca
gtcgcagccgcagtcaggcccggcatcgtctctgacaagctgaacaacgccattgcaacg
ggcaactggggcaggggcagggtcggagtcacgcaattgcttgacaggaccaactacatg
tccaccatttcgcacctgcgcaggatccagtcgccgctcagcagaagccagcccaacttt
gaggcaagggatctgcacgctacacactttggcaggatctgccccgcagagacccctgaa
ggctctaactgtggactcgtcaagaaccttgcgctatctgcaataatctcggtaaacgtc
cagagcgccgaggtaacagaaaagctgtacgagcttggcgtccagaacgtcgaggatgcc
cgcgaggacctgagggagtcaggcacaagggtgtttgttgacggcaggctgataggctac
gtcgaaaagggagagcacctctctgacacgctgagatcgatgagaaggtcaggcaagatc
cacccgcacgtcgggatttacctttacagctcgcagaacgagaacgctacaaagcgcctc
tacatcagctgcaacgccggcagggtgctgcggccactcgttgtgctcagggatggcaag
cctcttgtaactaatgaagtcattgaaaaagtgtcgaaaaagttcctttcatggaacgac
ctgctctacatgggagtaatcgagctggtagatgctaacgaggaggagaactgctatgta
gccattgatccgaaaaagctggagccaaagcatacacacttggagatattcccatctgcg
attctgggtgtgggcgcttcaataatcccgtaccccgagcacaaccagtcgccaagaaac
acctatgaaagtgcaatggcaaagcagagcctcggcttctcgactccgctcatgaacgca
agcacctatgtcaggcagcactttatgctgtacccgcagacgccagtggtcagcacaaag
gcgataaacctgcttgggcttgaagaccgcccgacgggccagaacgcggtcgttgcggtg
ctcccatttgaaggctacaacattgaggacgcagtagtgttcaataagtcgtcagtcgac
agggggcttggcaggacgttcttttacaggatctatgaagctgaagccaagcagtacccc
ggcggcatgaaggacaactttgagctgccgcagccagatgccaacatccgcggctacagg
ggagaaaaagcataccgcctgctagagcaggacggcgcgataatgcacgaagccgtggtc
aacggaggcgacattttgatcggcaggacgtcgccgccaaggttcatggaagagtacaaa
gagttcgaggtcaagggcccgtacaggcgcgacacttcagtcggcgtcaggccatcagaa
aacggcgtcgttgatacggtgatagtcacgcagtcggtcgaaggcggcaagatgtacaag
atccgcgtcagggacatgaggatcccggagataggcgacaagtttgcctcaagacacggc
cagaaaggcgttgtcggcatgctggtcaaccaggaagacgtgccgtacaccgaggatggc
gtagtgcctgatattatgatcaacccacatgcgttcccatcaaggatgaccgtcggccag
ttcatggagtcgcttggcggcaaggccgcttcgctccggggcaggatcgtcgacggctcg
gcgttccttggggaaaagggcgacgacatcaagaccgccatggagcagtacggattcaag
tacaccggcaaggaaacgatgtacgacggcaggacgggcagaaagttcccagcagacgtc
tacatcggcgtggtatactatcaaaagctgcaccacatggttgccgacaagatccacagc
cgcgcaaggggccaggtccagatgctcacaaagcagcccacagagggcagggcgcgtggc
ggaggtctgaggtttggagagatggagcgcgactgccttatcgcctacggcgcatcaatg
atgctaaaggacaggctcttggaggagtccgacaaggctgaagtgaacgtctgcgagcgc
tgcggcctgcttgcatactatgacgtcaagcagcgccgttacatctgccgcgtctgcgga
gaaaaggccaagatatcgtcagttgtgatcgcatacgcgttcaagctcctgctgcaggag
atgatgagcctgaacgtcgctccgaggctccttgtgaaggagaaagtctaa
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integrated database retrieval system
