KEGG   Candidatus Nitrososphaera gargensis: Ngar_c22290
Entry
Ngar_c22290       CDS       T02305                                 
Symbol
rpoK
Name
(GenBank) DNA-directed RNA polymerase subunit K
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
nga  Candidatus Nitrososphaera gargensis
Pathway
nga03020  RNA polymerase
nga03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nga00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Ngar_c22290 (rpoK)
  09124 Replication and repair
   03420 Nucleotide excision repair
    Ngar_c22290 (rpoK)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nga03021]
    Ngar_c22290 (rpoK)
   03400 DNA repair and recombination proteins [BR:nga03400]
    Ngar_c22290 (rpoK)
Transcription machinery [BR:nga03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     Ngar_c22290 (rpoK)
  RNA polymerase III system
   RNA polymerase III
     Ngar_c22290 (rpoK)
  RNA polymerase I system
   RNA polymerase I
     Ngar_c22290 (rpoK)
DNA repair and recombination proteins [BR:nga03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Ngar_c22290 (rpoK)
SSDB
Motif
Pfam: RNA_pol_Rpb6 Med3
Other DBs
NCBI-ProteinID: AFU59159
UniProt: K0IND0
LinkDB
Position
1733752..1734225
AA seq 157 aa
MVVKHSSKKSAAPKKPATTAKAKTKKASAPRPLKKNKKGAASRKQVQELIASKKSSRPAD
EVVTYPEVEYELKEIEPQGNKVLIGPPWLTRFERARITGSRSLQLSLGAPPLIKVPEQAK
SSIMLAVEEIDAKALPISIRRILPNGVYQDIPIDWMK
NT seq 474 nt   +upstreamnt  +downstreamnt
ttggtagtgaaacattcttcaaaaaaatctgctgcacccaaaaagcccgctactactgcc
aaggctaaaaccaagaaggcaagtgcaccaagaccgctgaagaagaacaagaaaggcgct
gcttccagaaagcaggtgcaggaattgatcgcatcgaaaaagtcgtcgcggcctgccgac
gaggttgtcacttatccagaagtcgagtacgagcttaaggagatagaaccccaaggaaac
aaggtgctcattggcccgccatggctcacgcgctttgagcgcgctaggataaccggttcg
cggtcgctccagctgtcgcttggtgcgccgccgcttatcaaggtgcccgaacaggccaag
agctcgatcatgcttgcagtggaagagatagacgccaaggcgctcccgatttctataagg
cgcatactgccaaacggcgtgtaccaggacattcccatcgactggatgaagtag

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