Naegleria gruberi: NAEGRDRAFT_51024 Help Entry NAEGRDRAFT_51024  CDS       T01241                                  Name (RefSeq) RNA polymerase II   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism ngr  Naegleria gruberi Pathway ngr03020   RNA polymerase ngr03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:ngr00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     NAEGRDRAFT_51024   09124 Replication and repair    03420 Nucleotide excision repair     NAEGRDRAFT_51024  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ngr03021]     NAEGRDRAFT_51024    03400 DNA repair and recombination proteins [BR:ngr03400]     NAEGRDRAFT_51024 Enzymes [BR:ngr01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      NAEGRDRAFT_51024 Transcription machinery [BR:ngr03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      NAEGRDRAFT_51024 DNA repair and recombination proteins [BR:ngr03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       NAEGRDRAFT_51024 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R CBFD_NFYB_HMF LonB_AAA-LID Motif Other DBs NCBI-GeneID:  8855057 NCBI-ProteinID:  XP_002674498 JGI:  Naegr1_51024 LinkDB All DBs AA seq 1757 aa AA seqDB search MSVCEVLHAETQEKGKPKESGLMDLRMGTIDHHLSCLTCGGNATECPGHFGHVRIHPVFN VLFINTVVKVLQSVCIHCGKLLADKSSLQFKKASKFVNRRKRFKEMIDLCRKDKCIIETG NKENEQNQEANIDPTFQPRNGCGGLQPKISRDGLKIFAEYKKDTSAEAKQELTKQELTAE RALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPIPPPQVRPSVHHGSADRSEDDLTHK LADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYHCATYVNNEYPGVPTATTKSGRPLKSI RQRLKGKEGRVRGNLMGKRVDFSARTVITADPNIDIDQVGVPRTVASNMTVPEIVTPFNF ERLNELVTNGPLTYPGAKYVIREDGTRIDLRFASGKANDQIQLEYGYKVERHLQDGDVIL FNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADFDGDEMNLHVPQSLQTKAELLE LMMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAKDLMMNCLMHLIDFDGKLPVP AILKPKPLWTGKQLFTFLLPKVNLENTSSTHEDLTDKKDHLDHDIPEFDTKVLIDRGELV SGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQRVINHWLINRGFSIGIGDTIADK ATMEQIEETIRKAEKDVKLIVKDAQEGKLRAEAGRTIQQSFENQVNKVLNKAREDAGNKA KKSLKDDNNIKSMVTAGSKGSYINISQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHG PESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYD GTVRDAQGNVVQFLYGEDGMDAHKVESQSIDIMNLSDAKFQDKYWYNSLGSSPSFTNPTE SSVSMPSGGILKESFISTKVYDEILKDPATYLSKVREEYKTLMEDRHILRTEIFPNAENK IVMPVNLKRIIKNAQKEYGIHPSIGKPSDMNPIYVIEKIKKLCDDLVVIKGTDELSTEAQ TNATLLFSMFLRSTFSSKVVLKELCLTQEAFDFLVGEIRMRFHNCLAQPGEMVGSVAAQS IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVAKNIKTPGLTIYLNNEYIGDFEKA KMVKEDLEYTTLGHVTAATSIVYDPEPANSVIEEDREFIEELLEELKDTAVLDSTTLNPW SLRFELDKMMMSDTLTMAQVAKKIQEEFQNDITCFYSDDNADKLILVVRIHKDDKEKEKD AQVAKDPSDEVLRKLEEEDIENSTVEFLRRLESNMLNELALKGYKDLKKVFLREENDKKV FSSSGVATVKQWVLDTEGCNLLAVLSHPYVDHTITTSNDVNEILDVLGIEACRNALMREM RKVIEFDGSYVNYRHLAILCDVMTHRGGLMAITRHGINRSDTGPLMRCSFEETVEILIEA ATFADTDTLKGVSANVMVGQLAPIGTGCFGLYLDEELLKQAVAVKPSFVTETKSMYGSLG ATTPYHTSGLATPYHGGVATPYHGGASSPWTQGAMTPLGRTPSPEYQGGFSPSPYNSAFS PVASSPTSPGHQGGYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPTSPNYSPTSPAYSP TSPNYSPTSPAYSPTSPAYSPTSPNYSPSSPAYSPTSPRATSPGAGYSPSSPAYSPTSPS YSPSSPNYSPSSPAYSPSSPNYSPSSPAYSPSSPSYNPGGGYSPSSPAYSPTSPSYSPTS PSYSPSSPAYSPGREDK NT seq 5274 nt NT seq  +upstreamnt  +downstreamnt atgtctgtctgtgaagtgcttcacgctgaaacacaagaaaagggaaaaccaaaggaaagt ggtttgatggatcttcgtatgggtaccattgatcaccatctttcttgtctgacttgtgga ggtaacgctacagaatgtcctggtcactttggccacgttagaatacatccagtgtttaat gttctctttattaatacagtagtgaaggtgctacaaagtgtgtgtattcattgtggtaaa cttttagcggataagagtagcttacaatttaagaaggcatcaaaattcgtgaacagacgt aaaagattcaaagaaatgatcgatctgtgtagaaaagacaaatgtataatagaaacagga aacaaggaaaatgaacaaaatcaagaagctaatattgacccaactttccaaccaagaaat ggttgtggtggtctccaacctaagatttccagagatggattaaagatttttgcagaatat aagaaggatactagcgccgaagctaaacaagaattaacaaaacaagaattgacagcagaa cgtgctcttcaaatctttaagagaattcctgctgaggatttggaattgttaggttttgat aaggataatgctcgtccagaatggatgattcttacatgtttacctattcctccaccacag gttcgtccaagtgttcaccacggttcagctgatcgttctgaagatgacttgacacacaaa cttgcagatattatcaaggctaatgctgccattcaaaagaatgaaaagtcaggtacacca cttcatcaaatggaagaaatggttagaatgttacaatatcactgtgctacctatgtgaat aatgaatatccaggtgttccaacagctacaactaaaagtggaagacctttaaagtcaatc agacaaagattgaagggtaaggaaggacgtgtcagaggtaacttgatgggtaaacgtgtt gatttttctgcaagaactgtcattactgccgatccaaatattgatattgatcaagttggt gttcctcgtactgttgcttcaaatatgacagtacctgaaattgttacacctttcaatttt gaaagattgaatgaattagttacaaatggtcctttaacttatcctggtgccaagtatgtt attcgtgaagatggtacacgtatcgatttgagatttgcttcaggaaaagctaacgatcaa attcaattggaatatggttacaaagttgaacgtcacttacaagatggtgatgttattctt ttcaacagacaaccttctctccacaaaatgtctatgatgggtcacagaattaaggtcatg ccttacagtacattcagaatgaatttgtcagtcactaccccatacaatgctgactttgac ggtgacgaaatgaatttgcacgttccacaatctcttcaaacaaaagccgaattgttagaa ttaatgatggtccctaggaatattattactcctcaaagtaacagaccagttattgccctt gtccaagatactttattggctgcttctaaacttacacgtcgtgatgtctttattgctaaa gatttaatgatgaattgcttaatgcacttgattgattttgatggtaaattacctgttcca gctattttgaaaccaaaaccattgtggactggtaaacaacttttcacattccttcttcca aaagtcaatcttgaaaatacatcatcaacccacgaagatttgaccgataagaaagatcac ttggatcacgacatacctgaatttgatacaaaggttttaattgacagaggtgaattagtt tcaggtgttttggacaagaaatctctaggttcttctcacggttcattgattcacattatt gtcaatgaaaagggtgttaatgaaggaaagaaattcttgggccaatgtcaaagagttatt aaccattggcttattaaccgtggtttcagtattggtattggtgacactattgccgataaa gctactatggaacaaatcgaagaaactattagaaaagccgaaaaggacgtcaaacttatt gtcaaggatgctcaagaaggtaaattgagagctgaagctggtagaactattcaacaatct ttcgaaaatcaagttaacaaggttcttaacaaggccagagaagatgctggtaacaaggct aagaagtcattgaaggatgacaataacatcaagtccatggtgacagccggttctaagggt tcttacattaacatttcacaaattattgcttgtgtcggtcagcaaaacgtcgaaggtaaa cgtattccttatggtttccgtaatagaactttacctcactttgcccaagatgaccatggt cctgaaagtcgtggtttcgttgctaacagttacctcagaggtttaactcctcaagaattc ttcttccacactatgggtggtcgtgaaggtttgatcgatactgccgtcaagacatctgaa actggttatatccaaagaagattgataaaggctatggaagatatcatggtcaagtacgat ggtactgtccgtgatgctcaaggtaatgttgtccaattcttgtatggtgaagatggtatg gatgcccacaaggttgaatctcaatcaattgatattatgaatttgagtgatgctaaattc caagacaagtattggtacaattctcttggtagttctccttctttcacaaacccaactgaa tctagtgtttcaatgccatcaggtggtattcttaaggagtctttcatttctactaaggtt tatgatgaaattttgaaggatcctgcaacctatctctcaaaggtccgtgaagaatacaag actttgatggaagatcgtcacattttacgtactgaaatcttccctaatgctgaaaataag attgtcatgcctgtcaacttgaaacgtattattaagaatgctcaaaaagaatatggtatc catccaagtattggtaagccatcagacatgaatcctatttatgttattgaaaagattaag aagttgtgtgacgacttggttgttatcaagggtactgatgaattgtcaactgaagctcaa actaatgcaactttacttttcagtatgttcttgagatcaaccttctcttcaaaggttgtt cttaaagaattgtgtcttacccaagaagcctttgactttttggttggtgaaattagaatg agattccacaattgtttggctcaaccaggtgaaatggtcggttctgttgctgcccaatct attggtgaacctgctactcaaatgactttgaatactttccactttgccggtgtgtcttca aagaacgttactttgggtgttcctcgtttgaaggaattgttgaacgttgccaagaatatt aagactccaggtttgactatttatttgaataatgaatatattggtgactttgaaaaggcc aagatggttaaggaagatttggaatatactactcttggacatgttactgctgctacttca attgtttacgatccagagccagcaaactctgttattgaagaagatagagaattcatagaa gaattgttggaagaactcaaggatacagcagttttggattcaactactctcaatccatgg tctctcagatttgaacttgacaagatgatgatgagtgacacattgactatggctcaagtt gctaagaagattcaagaagaattccaaaacgacattacttgtttctactctgacgataac gctgacaaacttattctcgttgttcgtattcacaaggatgataaagaaaaggaaaaggat gctcaagttgcaaaggatccaagtgatgaagttctcagaaagcttgaagaagaagacatt gaaaatagtactgttgaatttttgagaagactcgaatcaaacatgttgaacgaattggcc cttaagggttataaggatctcaagaaggtctttttgagagaagaaaatgacaagaaggtt ttcagcagttctggtgttgctactgttaaacaatgggttttggatactgaaggatgtaac ttgttggctgtcttatctcacccttatgttgatcatactattacaacatctaacgatgtt aatgaaattcttgatgttttgggtattgaagcatgtagaaatgccctcatgagagaaatg agaaaggttattgaatttgacggttcttatgttaactatcgtcacttggccattttgtgt gatgttatgactcacagaggtggtttgatggctattactcgtcacggtattaatcgtagt gacactggtccattgatgagatgttctttcgaagaaactgttgaaattcttattgaagct gctacatttgctgatactgatactttgaagggtgtttctgctaacgttatggttggtcaa ttggctccaattggtactggttgttttggtttgtatttggatgaagaattattgaagcaa gctgttgctgttaaaccaagctttgttactgaaactaaatcaatgtatggaagtcttggt gcaacaacaccttatcatacaagtggtttggctacaccttatcatggtggtgttgctacc ccatatcatggtggtgcttcaagtccatggactcaaggtgcaatgactcctcttggaaga actccttcaccagaataccaaggtggattcagtccttcaccttataattctgcattctct ccagttgctagttctccaacttctcctggacatcaaggtggctattctccatcctcacca ggtaattatagtccaacctcacctgcttattctccaagtagtccaaactattcaccaact tcaccagcttattcaccaacaagtccaaattacagtcctacatcaccagcttactcacca acttcaccaaattattcaccaacatctcctgcttactcgcctacttcaccagcttattct ccaacaagtccaaactattcaccatcatcaccagcttactctccaactagtccacgtgct acaagtcctggtgctggttatagtccatcttctccagcttactcaccaactagtccaagc tattcaccaagcagtccaaattattcaccatcatcaccagcttattcaccatccagtcca aactattcaccatcttctcctgcctattcaccaagcagtccaagttacaatcctggtggt ggttatagtccatcttcacctgcttattctccaaccagtcctagctattcaccaactagt ccaagctatagtccatcatctcctgcctattcaccaggacgtgaagataaataa

DBGET integrated database retrieval system