Nitrosopumilus sp. K4: NsoK4_07020
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Entry
NsoK4_07020 CDS
T07707
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
nip
Nitrosopumilus sp. K4
Pathway
nip03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NsoK4_07020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nip03021
]
NsoK4_07020
Enzymes [BR:
nip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NsoK4_07020
Transcription machinery [BR:
nip03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
NsoK4_07020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
FYVE_2
MRNIP
Zn_Tnp_IS1595
Ribosomal_L37e
OrfB_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
QUC64189
UniProt:
A0A8B2HUL0
LinkDB
All DBs
Position
complement(1160885..1164232)
Genome browser
AA seq
1115 aa
AA seq
DB search
MADPSVKRWPVIQDILKREGVARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQL
GKVKLQQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVP
VMAKSNACILHNFSTQKLVEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRETVG
GNIVFKAKVYSSIVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREIAA
AVSLVDEIQDELEGSFEKAGDVPTSKDAIVYISKRIAPGMLEEFQIKRAETLLDWGLLPH
LGKHPENRKEKAQFLGEAACKLLELKLGWIAPDDKDHYGNKVIKFAGQMLADLFRTAFRN
LVRDMKYQLERSGQKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLLDRTNYL
STISHLRRIQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNV
PSEEIVEKLYDLGTVHFFDAKEDVKKDGTRIFVDGKLIGYYKDGEQLAESLRELRRNSKI
HPHVGISFHKSEIEGATKRLYVNCNAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSWSD
LLRMGVLEMIDANEEENCYITLDEKDAKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNT
YESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQTPIVNTKAMKLLGLEDRPAGQNCVVAVL
PFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRDNFEIPNAEDNIRGYKG
EKSYRLLEEDGVVASEAQVHGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSET
GVVDTVVMTQSNEGGKMYKIRVRDMRIPEIGDKFASRHGQKGVLGILAKNEDLPYTADGI
SPDVLINPHAFPSRMTVGMMMESICGKAASFRGSQFDGSAFVGEKMEEVRAVMDAAGFKY
SGKEKMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGG
GLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKYVCRVCGD
KAKVSSVSVAYAFKLLLQEMQSLNVAPRLLIKEKV
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggcagatccttcagtaaagagatggcctgtaattcaggatattttaaaacgtgaagga
gttgcaagacaacatctaaactcttttgatgaatttttagaaagaggactacaaagcatc
atcaacgaagtaggacaaattgaaattgaaaatgctgaatatccgtacaagattcaacta
ggtaaagtaaaactacaacaaccaagaatgatggaacttgacggctccattactcacatc
actccagcagaagctagattgagaaatgtttcatactctgccccagttatgatggaggca
agtgttgtagaagatggaaaaattttggaatcaagatttgttcacattggtgatgtaccg
gtcatggcaaaatcaaatgcatgtatcttacacaacttttcaactcaaaaattagttgaa
catggtgaggatccaaatgatcctggcggttactttatcataaatggttctgaaagagta
attgtaggactagaagatctttcttacaataaaattattgtcgatagagaaacagttgga
ggaaatattgtctttaaggcaaaggtgtattcttcaattgttggttacagagcaaaacta
gaacttgtgatgaaaaacgatggattgattgttgcaaggattcctggttctccagttgat
atcccagttgtgactttgatgagagcacttggattagaatctgacagagagattgcagct
gcagtttcgcttgttgatgaaatccaagatgagcttgaaggctcttttgaaaaagcaggt
gatgttccaacatctaaagacgcaattgtttacatcagtaaaagaattgcacctggaatg
ttagaggagttccaaatcaaacgtgctgagacgctattggattggggtctattgccacac
ttgggcaaacaccctgaaaacagaaaagaaaaggcacaattccttggtgaggcagcatgt
aaattattagaattaaagcttggatggattgcacctgatgacaaagaccactatggaaac
aaagtcatcaaatttgcaggacagatgcttgcagacttgtttagaactgcatttagaaat
cttgtaagggacatgaaataccagctggaaagatctggtcaaaaaagaggaataaatgca
gtagctgctgcaataaggcctggtattattactgataaactaaacaacgcaattgctaca
ggaaactggggcagaggaagagttggcgttacccaattacttgatagaacaaactatctt
tcaacaatcagccaccttagaagaatacaatctccccttagtagaactcagccaaacttt
gaggcaagagatcttcacgcaactcactttggtagaatttgcccaagcgaaacacctgaa
ggatctaactgtggtcttgtaaagaacttggcattatctggaattatctctgtgaatgtt
ccttctgaagaaattgtagaaaaactatacgacttgggaactgttcatttctttgatgca
aaagaagatgtcaaaaaagacggaaccagaattttcgttgatggaaaactaattgggtat
tacaaagatggtgaacaactagccgaatccctaagagagttgagaagaaactcaaagatt
catccgcatgttggaatctctttccacaaatccgaaattgaaggtgcaacaaagagactc
tatgtcaactgtaatgcaggacgtgtattaagaccattaattattatcaaagataacaag
ccattacttacacaagatcttttagataaaatttcaaagaaactgctttcctggagcgac
ttgcttagaatgggagtattagaaatgattgatgcaaacgaagaagaaaactgctacatc
acactagatgagaaagatgcaaagaaacacacacaccttgaagttttcccacctgcaatc
ttgggtgcaggagcatcaataattccgtatcctgaacacaaccagtctccaagaaacact
tacgaatctgcaatggcaaaacagagcctgggattctcaacaccgatgatgaataccagt
acctatgtcagacagcactttatgctataccctcaaactccaatcgtaaacacaaaggca
atgaaactgcttggactagaagacaggccagcaggtcagaactgtgttgttgcagtattg
ccttttgatggttataacattgaagatgcaattgttctaagcaaggcatcagttgacaga
ggccttggaagaacgttcttctttagaatctatgacgcagaagcaaaacaatacccaggc
ggaatgagagacaactttgagattccaaacgctgaagacaacatcagaggctacaagggt
gaaaagtcataccgattactagaagaagacggtgtagttgcatctgaagctcaagtacat
ggaggagacatcctgattggaaaaactagtcctccaagattcatggaagaatatagagag
tttgaatcatctggtccttatagaagagatacatcaattggtgtaaggccttctgaaact
ggtgttgttgacactgtagttatgacgcaatcaaatgaaggtggaaagatgtacaagatt
agagttagagatatgagaattccagagattggtgacaagtttgcatcaagacacggacag
aaaggtgtacttggaattttagcaaagaatgaagacttgccatacactgcagatggaatt
tctccagacgttttgattaatccacatgctttcccatctagaatgacagttggaatgatg
atggaatcaatctgtggcaaagctgcttcatttcgtggaagtcagtttgatggctctgca
tttgttggagagaagatggaagaagttagggcagtaatggatgctgcaggtttcaaatat
tcaggtaaagaaaagatgtatgatggacgaactggaaaatcattcccagtcgaagtcttc
atcggagttgtatattatcaaaaactacaccacatggttgctgacaagatacacgcaaga
gcacgtggtcaagttcagatgttgacaaagcaaccaacggaaggaagagcaagaggtggt
ggtttgagattcggagaaatggagagagactgtttgattgcatacggtgcatctatgatc
ctcaaagacagactgctagatgaatcagacaaatcagatatctttgtctgtgagagatgt
ggtcttgtagcttatcatgatgttaaacaaagaaaatatgtctgcagagtatgtggtgac
aaggccaaagtatcatcagtatctgttgcatatgcattcaaactattactgcaagagatg
caaagcctcaacgtcgcacctagactgttaatcaaggagaaagtataa
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