Candidatus Nitrosopumilus sediminis: NSED_01670
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Entry
NSED_01670 CDS
T02303
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NSED_01670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nir03021
]
NSED_01670
Enzymes [BR:
nir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NSED_01670
Transcription machinery [BR:
nir03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
NSED_01670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
FYVE_2
MRNIP
Zn_Tnp_IS1595
OrfB_Zn_ribbon
Ribosomal_L37e
Motif
Other DBs
NCBI-ProteinID:
AFS82146
UniProt:
K0BCP6
LinkDB
All DBs
Position
285029..288376
Genome browser
AA seq
1115 aa
AA seq
DB search
MADPSIKRWPVIQDILKREGIARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQL
GKVKLQQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVP
VMAKSNACILHNFSSQKLIEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRETVG
GNIVFKAKVYSSIVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREIAS
VVSLVDDIQDELEGSFEKAGDVPTSKDAIVYISKRIAPGMLEEFQIKRAETLLDWGLLPH
LGKHPENRKEKAQFLGEAACKLLELKLGWITPDDKDHYGNKVIKFAGQMLADLFRTAFRN
LVRDMKYQLERSGQKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLLDRTNYL
STISHLRRIQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNV
PNEEIVEKLYDLGTVHFFDAKEDLKKDGTRVFVDGRLIGYYKDGSELAESLRELRRNSKI
HPHVGVSFHKSEIEGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTSELLDKISKKLLSWTD
LLRMGVLEMIDANEEENCYVTLDEKDAKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNT
YESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNCIVAVL
PFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRDSFEIPNAEDNIRGYKG
ERAYRLLEDDGVVASEAPVKGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSET
GVIDTVVMTQSNEGGKMYKIRARDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTASGM
SPDVLINPHAFPSRMTVGMMMESICGKAAALRGKRFDGSAFVGEKMPEVKEVMDAHGFEY
SGKETMYDGRTGKSFPVDVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPTEGRARGG
GLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKYVCRVCGD
KAKVSSVSVAYAFKLLLQEMQSLNVAPRLLIKEKI
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggcagatccttcaataaaacgttggccagtaattcaggatattttaaaacgtgaaggt
attgcacgtcaacatctaaactcatttgatgaatttttagaaagaggacttcaaagtatc
ataaatgaagttggacaaatcgatattgaaaatgctgaatatccatacaaaattcaactt
ggaaaagtaaaacttcaacaaccaagaatgatggagcttgatggttcgatcactcacatt
actccggctgaagctagattgagaaatgtttcttattctgcacctgtaatgatggaggca
agtgttgtagaagatggaaaaattttagaatcaagatttgtacatattggagatgtacca
gttatggcaaaatcaaatgcatgtattttacataatttttcttctcaaaaattaattgaa
catggagaggatccaaatgatccgggtggttactttatcatcaatggttcagaacgtgtt
attgttggattggaagatctttcttacaacaaaataattgtcgatagagaaactgtaggt
ggaaatattgttttcaaagctaaagtctattcttcaatagtcggctatcgtgcaaaatta
gaacttgtcatgaaaaatgacggattaatagttgcccgaattcctgggtctccagttgat
atccctgttgttacattaatgagagcacttggattggaatctgatagagagattgcatcc
gtagtttcattagttgatgatattcaagatgaactcgaaggctcttttgaaaaagcaggt
gatgtcccaacatcaaaagatgccattgtctatatcagtaaaagaattgcacctggaatg
ttagaagaattccagattaaacgtgctgaaactttacttgattggggactcttgccacat
ttgggtaagcatcctgaaaatagaaaagaaaaagcacagttcctcggtgaagcagcttgt
aaattattagaactaaaacttggatggattactcctgatgataaagatcattatggaaac
aaggtcattaaatttgcaggacaaatgttggctgatttgttcagaacagcatttagaaat
ctagttagagacatgaaatatcaattagagcgttcaggtcaaaaacgtggaatcaatgca
gttgctgcagcaattcgtcccggaataattactgataagctaaacaatgcaattgcaact
ggaaactggggcagaggacgtgttggtgttactcaattacttgatagaacaaattatctt
tcaacaattagtcatcttagaagaatacaatctcctctaagtagaacacaaccaaacttt
gaagcaagagatttgcatgctacacactttggaagaatttgtcctagtgaaactcctgaa
ggatcaaactgtggtttggtcaaaaatttggccctatctggaatcatctccgtaaatgta
ccaaatgaggaaattgtcgaaaaactctatgatcttggaacagttcatttctttgatgca
aaagaagatttgaagaaagatggaactcgtgtatttgttgatggtcgattaattggttat
tacaaagatggttcagaattagccgaatctctcagagaactgagaagaaattcaaaaatt
catcctcacgttggagtatcattccacaaatctgaaatcgagggctcaacaagaagacta
tatgtcaattgtaatgcaggtcgagtgctacgcccactaataattatcaaagataacaaa
ccgctactaacttctgaattgctagataaaatttcaaagaaacttctctcttggactgat
ctattgagaatgggtgtcttagaaatgattgatgcaaatgaagaagaaaactgttatgtt
actttggatgagaaagatgcaaaaaaacatacgcacttggaagtgttcccaccagcaatc
ctaggtgcaggagcttcaatcatcccatatcctgaacataaccaatctccaagaaataca
tacgaatctgccatggcaaaacagagtttaggattttcaacacctatgatgaatactagt
acatacgttagacaacactttatgctatatccacaagtcccaattgtaaacacaaaagca
atgaagcttttaggattggaagataggccagcaggtcagaactgtattgttgcagtattg
ccatttgatggttacaacattgaagatgctattgtgttaagtaaagcatctgttgatagg
ggtcttggaagaactttcttctttagaatttatgatgctgaagcaaaacaataccctggt
ggaatgcgtgatagttttgaaattccaaatgctgaagataacattagaggttacaaagga
gaacgtgcatacagattacttgaagatgacggagtagttgcatctgaagctcctgtaaaa
ggaggagatatcctaattggaaaaactagtcccccaagattcatggaagaatacagagag
tttgaatcatctggtccatatagacgagatacttctatcggtgtccgaccatctgaaacc
ggtgtaattgacactgtagttatgactcaatcaaacgaaggtggaaaaatgtacaagatt
cgtgcaagagatatgagaattccagaaattggtgataaatttgcatcaagacatggacaa
aaaggtgtactgggaattttagctaaagcagaagatttgccatatactgcaagtggaatg
tctcctgatgttttgattaatcctcacgcattcccttcaagaatgacagttggaatgatg
atggaatctatttgtggtaaagcagctgcattacgtggaaaaagatttgatggttctgca
tttgttggagagaaaatgcccgaagtcaaagaagtaatggatgcacatggttttgaatac
tctggtaaagaaacaatgtatgatggaagaactggaaaatcattcccagtagacgttttc
atcggagttgtatattatcaaaaattacaccacatggttgcagataaaatccatgcaaga
gctcgtggacaagttcagatgttaactaaacaaccaacagaaggtagagcaagaggtggt
ggattaagatttggtgagatggaaagagactgcttaattgcttatggtgcctcaatgatt
cttaaagacagattgttagatgaatctgataaatctgatatttttgtatgtgagagatgt
ggattagtagcatatcatgacgttaaacaaagaaaatatgtttgcagagtctgtggagat
aaagccaaagtgtcctctgtatctgtagcatatgcattcaaactgctcttacaagaaatg
cagagtcttaacgttgcaccacgattgttgatcaaggagaagatctag
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