Nilaparvata lugens (brown planthopper): 111048005
Help
Entry
111048005 CDS
T07276
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
nlu
Nilaparvata lugens (brown planthopper)
Pathway
nlu03020
RNA polymerase
nlu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nlu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111048005
09124 Replication and repair
03420 Nucleotide excision repair
111048005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlu03021
]
111048005
03400 DNA repair and recombination proteins [BR:
nlu03400
]
111048005
Enzymes [BR:
nlu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111048005
Transcription machinery [BR:
nlu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111048005
DNA repair and recombination proteins [BR:
nlu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111048005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
111048005
NCBI-ProteinID:
XP_039291023
LinkDB
All DBs
Position
8:21030071..21062672
Genome browser
AA seq
1891 aa
AA seq
DB search
MSITSDSKAPLRTVKRVQFGILSPDEIRRMSVTEGGICYPETMEAGRPKLRGLMDPRQGV
VDRLSRCQTCAGNMSECTGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHP
KIKEIVMKTKGQPRKRLTFVYDLCKGKNICEGGDEMDLNKDNVDDPNSQQPKKAGHGGCG
RYQPNLRRAGLDVTAEWKYVNEDSQEKKIVLTAERTWEILKHITDEECFILGMDPKFARP
DWMIVTVLPVPPLAVRPAVVMYGSARNQDDLTHKLADIIKCNNELKRNEEAGAAMHVISE
NIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART
VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIHLMKELVSRGNSQYPGAKYIVRDNGE
RIDLRFHPRPSDLHLQYGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMN
LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAV
RKMTKRDVFLEKEQMMNLLMHLPIWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRT
HSTHPDDEDNGPYKWISPGDTKVREKLTVMRLATATHIFRIIIYLTLLIFVFLGHYFQID
HILILMISDVSGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMDLEPTPGNT
LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAV
KTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQKIASIDLS
NAKFENMFKFDAANERHLRKIFSEDVLREIVGSGEVISELEKEWEQLSRDREALRSIFPS
GESKVVLPCNLKRMIWNVQKIFHINKRAPTDLSPMKVIQGVRDLLQKCIIVAGNDHLSRQ
ANENATLLFQCLVRSTLCTKLVSEKFRLSTEAFEWLVGEIENRFQQAQCQPGEMVGALAA
QSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGAAARDAE
KAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLL
RIELDRKRMTDKKLTMEQISEKVNAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKLQDE
EETVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKKRIIITESGEFKAIA
DWLLETDGTSLMKVLSERDVDPVRTCSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY
VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMR
GVSENIIMGQLPRMGTGCFDLLLDAEKCKEGFEISASMGVGMMDGSGMYFGSAATPSMSP
SRTPWQHAGTPAYGVTAWSPGEGSGMTPGAPGFSPSGSSDASGLSPGYSPGWSPTPGSPG
SPGPSSPFIPPTVGGMSPSYSPTSSTYAPASPSLAPASPNYSPTSPNYSPASYSPASPSY
SPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPTSPSYSPTSPSYSPSSPRYS
PASPSYSPSSPNYSPTSPSYSPTSPSFVSSPQYTPTSPQYSPTSPNYSPTSPAYSPTSPS
YSPSSPKHTPGSTHYSPTSPKYSPTSPTYSNTSPQYSPSSTKYSPTSPTFTPPSPRYSPT
SPTSYSPTVPGYSPTSPVYSPTSPNYESPDE
NT seq
5676 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattacttcagattccaaagctcctctgagaactgtgaagagagtacagtttggt
attctctctccagatgaaattcgtcgtatgtcagtcacggagggcggtatctgctatcca
gagaccatggaagcaggccgccccaagctgcggggtctcatggaccccagacagggtgtg
gtcgacaggctgtcacgttgtcagacctgtgcaggaaacatgtcggaatgcacaggccat
ttcggacacattgatctcgcaaaacctgtctttcatgttggatttgtaacaaagacaata
aaaatactccgttgtgtgtgtttttactgctcaaaactgcttgtcagccctagtcatcca
aaaatcaaagaaatcgtgatgaaaaccaaaggtcagcctcgaaaacgtttgacatttgtg
tacgacctttgcaagggtaaaaacatttgtgagggtggagatgaaatggatttgaacaaa
gataatgtcgatgatcccaattcacagcagccgaaaaaagccggacacggcggctgcggt
cgctaccagccgaacctgcggcgtgccggcctggatgtgacggccgaatggaagtacgta
aacgaggactcgcaggagaagaagatagtgctgacggctgagcgcacctgggagatcctc
aagcacatcaccgacgaggaatgctttattctgggaatggaccccaagtttgccaggccc
gactggatgattgtcaccgtcctacctgtgccgccgctggccgtcaggccggctgtcgtc
atgtatgggtcggctaggaatcaggacgatcttacgcacaaactggccgatatcatcaag
tgtaataacgaactgaaaaggaacgaggaggctggagctgcaatgcacgtcatatccgag
aacatcaaaatgctgcagtttcacgtggccacgctggttgacaacgatatgcccggtttg
cctagagctatgcagaaatcaggcaaaccgttgaaagcgatcaaggcgcgactgaagggc
aaagaagggcgtatccgaggtaatttgatgggtaagcgagtggacttttctgcgcgaact
gtgatcacgccggacccgaatctgcgcatcgaccaagtgggcgtgccgcgctccatcgct
cagaacatgacattccccgagattgtcactccgttcaacatccatctgatgaaggagctg
gtgagcaggggcaactctcagtacccgggtgccaagtacattgtgcgcgacaatggcgag
cgaatcgatctgcgcttccatccgcggccgtccgacctccacctgcagtacggctacaag
gtggagcgccacatccgcgacggcgatctcgtcattttcaaccgacagcccacgctgcat
aagatgagtatgatgggccacagggtcaaagtgctgccctggtctactttccgtatgaat
ttgagttgcacgtcaccgtacaacgccgactttgacggtgacgagatgaatctgcacgtg
ccgcagtcgatggagacacgtgccgaggtggagaacatccacgtgacgccccgccagatc
atcacgccgcaggccaacaaacccgtcatgggaattgtgcaggacacgctcaccgctgtc
aggaagatgaccaaacgtgatgtcttcctcgagaaggaacaaatgatgaatcttcttatg
catcttccgatttgggacggcaaaatgccacagccgtgcattttgaagccgaaaccatta
tggacaggaaaacaaatattctcgctgattattcccggtaacgtaaacatgatccgaaca
cactcgacacatcctgacgatgaggataacggaccttataaatggatatcacccggagac
actaaagtaagagaaaaactaactgtaatgcgtctcgcgaccgctactcatatatttcgc
attattatttatcttactttgcttatttttgtttttcttggccattatttccagattgat
catattttaatattgatgatatcggatgtttcaggtcactcaatcggtattggagacacc
attgctgatccgcagacctatttggaaattcagaaggccatcaaaaaagccaaagaggac
gtgatagaggtcattcaaaaggctcacaacatggacctcgagcctactcccggtaacaca
ctcaggcagactttcgaaaatcaggtgaacagaattctgaacgacgctcgtgacaagact
ggaggctcagctaagaaatcgttgactgaatacaacaatctaaaggctatggtggtttca
ggatccaagggatccaacattaacatttctcaggttattgcctgtgtaggtcagcagaac
gttgaaggtaaacgaattccgtttgggttccgcaagcgtactctgccgcacttcatcaag
gacgattacggtcccgagtcaaggggcttcgtcgagaactcgtacctggccggcctcacg
ccgtctgagttcttcttccacgccatgggagggcgtgagggtctcatcgatacggctgtc
aagactgctgaaaccggttatatccagcgtcgtctgatcaaagctatggagtcggtgatg
gtgcactacgacggcacagtgcgtaactcagtgggtcagctgatccagttgcgatacggc
gaggatggcctctgcggcgagacggtcgagttccagaagatcgcctccatcgacctctcc
aacgccaagttcgagaacatgttcaagtttgacgccgccaacgagagacatctgcgtaaa
atcttctcggaagacgtgctgcgagagatagtgggcagtggagaggtgatatcggagctg
gagaaggagtgggagcagctgtcacgtgacagggaggcactgcgctccatcttccccagt
ggcgagtccaaggtggtgctgccctgcaacctcaagcgcatgatctggaatgtgcagaag
atattccacatcaacaagcgcgcgcccaccgatctcagtcccatgaaagttatacaagga
gtgcgagacctgctgcagaagtgcataatagtggcgggcaacgaccacctgagccggcag
gccaacgagaacgcgacgctgctcttccaatgtctggtgcgctccacactttgcaccaag
ctcgtctcagagaagttccgcctttccaccgaggcgttcgagtggctcgtcggcgaaatc
gagaatcgattccagcaggcgcagtgtcaacccggtgaaatggttggcgcgctggccgca
cagtcgctgggagagccggccacccagatgacactgaacacgttccatttcgccggagtg
tcgtcgaagaacgtgacattgggtgtgccgcggctcaaggaaatcatcaacatcagcaag
cggcccaaggcgccgtcgctaactgtctttttgaccggcgccgcagccagggacgccgag
aaggccaagaatgtgttgtgtcgactcgagcacactacgctcaggaaggtgacagccaat
acagcaatctactacgatcccgacccgcagaataccgtcatacctgaggatcaggagttt
gtgaacgtctactacgaaatgcctgactttgatccaactcgtatttcaccctggctgcta
cgtattgagttggatcgtaagaggatgacagataagaaactgacaatggaacagatctcg
gagaaagtaaacgccggcttcggtgacgacctgaactgcatcttcaatgacgacaacgcc
gagaagctggtgctgcgcatccgaatcatgaacagcgacgagaacaaactgcaggacgag
gaggagaccgtcgacaaaatggaggacgacatgttcctcaggtgtattgaggccaacatg
ttgtctgacatgaccttacagggtatcgaagcaatttcaaaggtatacatgcatctgccg
caaaccgactcgaagaaacgtatcatcatcacggagagtggggagttcaaggctattgcc
gattggctgcttgagactgacggcaccagtctcatgaaagtgctcagcgagagggacgtg
gatccggtccgaacctgctccaacgatatttgtgaaattttctcggtactgggtatcgaa
gccgtccgtaaatcagtggagaaggaaatgaacgctgtgctacagttctacggtctgtac
gtcaactaccgtcatttggctctgctttgtgacgtcatgacagccaagggtcatctcatg
gccatcacacgtcacggaatcaatcgacaggacacgggtgccttgatgagatgctcgttc
gaggaaacagtggacgtgttgatggacgccgcatctcatgccgaggtggatcccatgcgt
ggagtctccgaaaacatcatcatgggacaactccccaggatgggaactggttgcttcgac
ctgttactggacgctgagaagtgcaaggagggctttgagatctcggcgagtatgggcgtg
ggcatgatggatggatcaggcatgtacttcggcagcgccgccactccctcaatgagtccg
tcgcgcacaccctggcagcacgctggcactccggcctacggcgtcaccgcatggtcacct
ggcgaaggcagtggcatgacgccaggggcgcccggtttctctccatcaggctccagcgac
gccagcggcctgtcacccggctacagtcccggctggagtcccaccccgggcagtcccggc
tcccccggcccctcctcgccattcatcccgcccacagtggggggcatgtccccctcctac
tcgcccactagcagcacctacgccccggcctcacccagtctggcccccgcctctcccaac
tactcccccaccagtcccaactattccccggcatcctactcgcctgcgtccccctcctac
tccccggcttccccttcgtactccccaacttccccatcctactcccccacttccccttca
tactccccaacctccccatcatactcccccacctctccatcatactcaccaacctctcca
tcatactcccccacttccccttcatactcccctacctcgccatcatactctcccacctcc
ccctcctactcaccagcttcaccatcctactccccaacttccccctcctactcacctact
tcaccttcctactccccaacatcaccgtcctactccccatcctcccctaactatacccct
acctccccatcctactcccctacctctccctcctactctccctcatccccaagatactcc
ccagcaagtccttcctactctccgtcttctccaaactactcccccacctctccatcctac
tctcctacttctccgagttttgtgtccagcccacagtacactcctacttctccgcagtat
tcccccacttcccccaactactcccctacttctccggcgtattcccccacttccccctca
tactcaccgagctctcccaagcatactccgggctctacccattattcgcctacttctccc
aagtattctcctacttctccgacttattcaaataccagcccgcagtactcgccttctagc
accaagtactcccctacttctcccactttcactcctcccagtcctcgctacagtcctact
tcccccacttcttactccccaactgttcccggttactcccctacttcccctgtctactca
ccaacttctccaaactacgagtctcccgatgaataa
DBGET
integrated database retrieval system
