Neodiprion pinetum (white pine sawfly): 124213771
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Entry
124213771 CDS
T08966
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124213771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npt03021
]
124213771
Enzymes [BR:
npt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124213771
Transcription machinery [BR:
npt03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
124213771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
CRISPR_Cas2
Motif
Other DBs
NCBI-GeneID:
124213771
NCBI-ProteinID:
XP_046471345
EnsemblRapid:
LOC124213771
LinkDB
All DBs
Position
3:8220394..8231213
Genome browser
AA seq
1697 aa
AA seq
DB search
MYCHRKMYKQLKSGMTMSAKHLVLENLEFSMFTNEDIRNLSVTKISTPLSFNILGNPLKG
GLYDPVLGPVSEKSDPCGTCGGNITKCSGHFGHIDLPLPVVNPLFHKQLASIIKLTCLRC
FKLQVPEPMKLLLVAKIKLLDEGFVSGLSDLEQEVQSIIAAGGDGTGTVEFVKEVIEAHV
ERLHNRQRLNHIVPLLAEENRSNARNVNMQRWMHVENILRQFQYVPICIHCQDSIPKIST
FRNRIMTTKSANDELDASKIKRGIVRRLETVLMMPDQTQKYLRELWNTERDVLKIIMPCL
STVHTEYPTDILFFSIIPVLPPIVRPVNYVNGQLIEHPQSQVYKAIIQDCLVLRNIIQTI
QDGDTSKLPEEGRIVFEQIRGNSPSEKLHNAWQQLQANVDHLMDRDVNKTTESANCQGLK
QVIEKKEGVIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFALKLTYPVPVTPWNVA
ELRQMIINGPNVHPGAVLVEGEDGSTTRISASAAVQRESIAKRLLTTSVKATKFFNGVKI
VHRHLHNGDILLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAH
FPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHMVSGVRLTLRGKFFSREDYMQLV
YCALSDIQGDITLLPPAIIKPKLLWSGKQLLSTVIINVTPRGKAKINLAASAKIGPKAWE
ARKPRRWKCGTEFSDPKTMSEAEVVIRNGELLTGVLDKIHYGATPYGLIHCVYELYGGTY
SSRMLSAFGKLFQAFLQRDGFTLGIEDILILSNADEERTKFIKSCRKIGESTQKSVLELP
EDTPMTEVKSKIQESYLINSKFQAQIDRKYKTALDVYTNDINKTCLPAGLLKKFPDNNLQ
LMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFAAYDPMPRAGGFIDGRF
MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLTVSYDSTVRDSDGSLV
QLYYGEDGLDVPSSQFLKKEQLDFLVHNRNAIVEKELLSRLKEDLSTEHILKSGRKMQRW
IKKHGDPLRKRRNSEFTKFSEKNRLSDPKYNKINQVCGRSKGALRLMREWVNTDEETKES
YKCSRCPDPVFSKYKQDSNYGVLTERIEGLINDYISKRKVENSADISEDELRDLLSFKVM
KTLCQPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKT
PSMEIPFRPNLENLEKQSNKLRLKLTRCTLSNVLRSIDVDGRLEIEPQRRMTYKLTIKFL
PHKSYKREYCVKRKYVLQATEYFFFRELFKEIKKAAQVPGALLYTEENKEPANDDQLDAD
DPESAPSSQTKGRLDFGEMHESSDEDEAAEDADATAARSLSRHQENQEYDDPDETSDDSD
ENEDEKMRDDKTMATESNRAEKTEKSEFENLLAEKRKKLIVDMYPHAIEYDFDDKKYLSC
ELRFWLPLKMSKLDLSTIIRSVAEKVVLWETPQIKRAFTFQNLNNETILKTDGLNIVEMF
KYNEILDLNRLYSNDIYGISQTYGIEAANRVIVKEVKDVFKMYGITVDPRHLLLIADYMT
FDGTFQPLSRKGMENSASPLQQISFESSLTFLKNATLHNKRDDLVSPSSRLIIGQPCKSG
TGSFDLMHRMERYILGQ
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgtattgccatagaaaaatgtacaagcaattaaaatcaggcatgacaatgtctgcaaaa
catctggtcctagagaacctggaattttcaatgtttactaacgaggatattcgcaactta
agcgttacaaaaatcagcacacctttgtctttcaacattttgggcaatccactgaaaggc
ggactctatgacccggtgttaggtccagtgagcgaaaagtcagatccctgtggaacatgt
ggcggaaatataacaaaatgttcgggacactttggacacatagacttgccattgcctgtg
gtaaatccgttattccacaagcagctggctagcatcatcaaattgacttgcttgcgttgt
ttcaaactgcaagtaccagagcctatgaaactgttgttggtagctaagataaaactgttg
gacgaggggtttgtctcagggcttagtgatttggaacaagaagttcaatccattatagct
gccggcggcgatggtactggaacagttgaattcgttaaagaagttattgaggctcatgta
gagaggcttcataatcgtcagaggttaaatcacattgtgccccttcttgctgaagagaat
cgttctaatgcaagaaatgttaatatgcaaagatggatgcacgtcgaaaatatactcagg
caatttcaatatgtacctatctgcatacattgtcaagatagtatcccaaaaattagtacg
ttcagaaaccgaattatgactactaaatcagccaatgatgagctggatgcaagcaaaatt
aaacgaggaatcgttagacgactggaaactgttctgatgatgccagaccagacacaaaag
tatttgcgtgagctctggaatacagaaagagatgtattgaaaataataatgccttgtttg
agtacagtgcatacggaatatccaacagacattctgttcttcagtataatacctgtactt
ccaccgatcgtaaggccagttaactacgtcaatggacaactgatagaacatcctcaatcc
caagtctataaagctattatacaggattgcttggtgctcaggaacattatacaaacaatt
caagatggagacacttcaaaacttccagaagaaggccgaattgtttttgaacaaataagg
ggaaattcgccgtcggaaaaacttcataatgcttggcagcagctccaagcaaatgtcgat
catctgatggatcgtgatgtaaataaaacgacggaatcagcaaactgccaggggctgaaa
caggtgattgagaagaaagagggtgtcattcgcatgcacatgatggggaaacgggtgaat
tttgcagcaagatcagtcatcactccagatcctaatttaaacatcgacgaaattggtatc
cccgaagcttttgctttgaagctgacttacccagttccggtaacaccttggaatgttgcc
gaattacgacaaatgataattaacggaccaaacgtacatccaggggcagttttggtggag
ggtgaagatggctcaacaactcgtataagcgcgagtgcagctgtgcaaagagaatcaatt
gcaaaacgacttttgactacaagcgtcaaagcgaccaaattttttaatggcgtaaagata
gttcaccgtcatttgcacaatggagatatcttgcttttgaatcgtcaacctactttgcat
aagccaagtatcatggcccataaagccaggatattgaaaggggagaaaacgttgcgcctt
cactatgccaattgtaaagcttacaacgctgactttgacggagatgaaatgaatgcgcat
tttccacaaaacgaacttgctcgaagtgaaggatacaatatagccaacgtttctaaccag
taccttgtcccgaaagatggtacaccattaagcggtttgattcaagatcacatggtttct
ggagtacgtttgactctcagaggaaaattcttttcaagagaagactacatgcagttagtt
tactgcgcattatcagatattcagggtgatataacgctattaccacctgccattatcaaa
ccaaagttattgtggtcaggcaaacaattgttatcaacagtcataattaatgttacacca
cgtggcaaagcgaagattaatcttgcagctagcgcaaaaattggcccaaaagcatgggaa
gctaggaagccgcgacgttggaaatgtggcaccgaattcagtgatccaaaaacaatgtca
gaagctgaagtagttatacgtaatggcgaactgctaaccggtgttctcgacaagattcat
tacggtgctacaccttatggcttgatacattgcgtatacgagctttacggtggtacatac
tcaagcaggatgctgagtgcgtttggaaaattattccaagcatttcttcagagagatggc
tttactttgggaatagaagatatcttaattctttcaaacgctgatgaagaacgtacgaaa
ttcatcaagtcatgtagaaagataggtgaaagcacccagaaatcagtgcttgagttgcct
gaagacacaccgatgacagaagtcaaatcaaaaatacaagaatcctatttgataaattcc
aagttccaagcgcaaatcgatcgtaaatacaaaactgctctggatgtctatacgaatgac
ataaacaaaacatgcctgccagctggactgctcaaaaaatttccggataataatttgcaa
cttatggttcagtccggagcaaaaggttcgactgttaacaccatgcagatttcttgtcta
cttgggcaaatcgaattggaaggaaagagaccgccgcttatgatcagtggcaaaagtctt
ccctctttcgctgcttatgatccaatgccaagagcaggcggctttattgacggtcgtttt
atgacaggaatccaaccccaagagttcttcttccattgcatggcaggcagagaagggctg
attgatactgcggtgaaaaccagtagatctggatacttgcagaggtgtttaattaagcat
ttggaaggcttaacagtcagttacgactcaaccgttcgcgattctgacggcagtttagtt
cagttatattacggagaagatgggctcgatgtaccgagttctcaatttctgaaaaaagaa
caactggattttttggtccataatagaaacgcgattgttgaaaaggaattgctaagccgt
ctcaaagaggatttgagcactgagcacatcttgaaatcagggcggaaaatgcaaaggtgg
ataaagaaacatggtgatcctttacgaaagcggcgcaatagcgaatttaccaaattttcc
gaaaaaaatcgactaagtgatcccaagtataataagatcaatcaagtttgcggcagaagc
aagggtgcactacgtttgatgagagaatgggtaaatactgacgaagaaactaaggaaagt
tacaagtgctcacgatgccctgaccctgtattttcaaaatacaaacaggactctaactat
ggagttctaacggaaagaatagaaggcttgataaacgattatatctcaaaaagaaaagtc
gaaaactccgcagatatatccgaagatgaactcagagacctcttatcattcaaagtaatg
aaaaccctttgccagccaggagagcccgtaggattactagcagcgcaatcaattggcgag
ccgtcaacgcagatgacgttgaatactttccattttgcgggacgtggtgaaatgaacgta
accctcggaattccaagattacgagaaatccttatgatggcctcgaagaatataaagaca
ccctcaatggaaattccgtttaggccgaatcttgaaaatctagaaaaacaatcgaacaaa
ttaagattaaagttaaccagatgcactttgtcaaacgtcttaagaagcattgatgtagat
ggaagattagaaatcgaacctcagagaaggatgacttataagctgacgataaaattctta
cctcacaaaagctacaaacgagaatactgtgtgaaacgcaagtacgttttacaggcaacg
gaatatttcttcttcagagaactgtttaaggaaataaaaaaggcagctcaagtacccgga
gcattgctgtacactgaggagaacaaggaaccagcaaacgacgatcaactagacgcagat
gaccctgaaagtgcgcctagcagtcagactaaagggagattagatttcggagaaatgcat
gaatcttctgatgaagatgaagctgccgaagacgcagatgcgaccgcagctaggtcactt
tctagacaccaagaaaatcaggaatatgacgaccctgacgaaacgagtgatgactccgac
gaaaacgaagacgagaaaatgcgagatgacaaaactatggcaactgaatcaaacagagct
gaaaagacagagaagagtgagttcgaaaatctgcttgcagagaaaaggaaaaaactaatt
gtcgacatgtacccccatgctattgagtacgattttgatgacaagaaatatttatcatgc
gaattaaggttctggctacctttgaaaatgtcaaaactggacttatctacgatcattaga
tcagtcgcagaaaaggtcgtactatgggaaacgcctcagataaagcgagcatttacattc
caaaatctgaacaatgaaactattctgaaaactgatggattaaacattgtggaaatgttc
aagtacaatgaaatcctggatctcaacagattatactctaatgacatatacgggatttcg
caaacctacggcatcgaagcagcgaatagagttatagtaaaggaagtgaaggatgtgttt
aaaatgtacggaattactgttgatccacgacatttacttctgatcgccgactacatgact
tttgacggaactttccaaccgctaagtcgtaaaggaatggagaactctgcatctcccctc
cagcaaattagttttgagagttcactcaccttcctgaaaaatgctacgctccataacaaa
cgagatgaccttgtttcaccatccagtcgcttgatcatcggtcaaccttgcaaatccgga
acaggatcatttgatttgatgcatagaatggaaaggtacattctgggtcagtga
DBGET
integrated database retrieval system
