Neodiprion pinetum (white pine sawfly): 124222256
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Entry
124222256 CDS
T08966
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03030
DNA replication
npt03410
Base excision repair
npt03420
Nucleotide excision repair
npt03430
Mismatch repair
npt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124222256
03410 Base excision repair
124222256
03420 Nucleotide excision repair
124222256
03430 Mismatch repair
124222256
03440 Homologous recombination
124222256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npt03032
]
124222256
03400 DNA repair and recombination proteins [BR:
npt03400
]
124222256
Enzymes [BR:
npt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
124222256
DNA replication proteins [BR:
npt03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
124222256
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
124222256
MMR (mismatch excision repair)
DNA polymerase delta complex
124222256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
divDNApol
Motif
Other DBs
NCBI-GeneID:
124222256
NCBI-ProteinID:
XP_046489002
EnsemblRapid:
LOC124222256
LinkDB
All DBs
Position
6:complement(978772..987092)
Genome browser
AA seq
1102 aa
AA seq
DB search
MNKRPFSGPPSKKNKFRVDDDDDEYPGSFEAELAIMEQMDDEFQDPSQASGEPDPADPQM
RVRGPDQENTCSKWNRPDPRPFNPQTDSLTFQQIEVDHYIGQPLAGMPGSKIGPVAIMRM
YGVTMEGNSVCCHVHGFCSYFFVTAPEKFNNSHCKPFKDALNRAVLTDMRSKNDKVTEAV
LVVELIYKQSLYGYAGEDLVPFIKITVALPKLVAPCKRLLEKEMIFPTFSDHVYQAFETN
IEFDIRFMVDTHVVGCSWIKLVPGKWKLRGHPGNDLPLTSRCQLEVDVAWDNFIAHPPEG
EWAKVAPFRILSFDIECAGRKGIFPEANHDPVIQIANMLIRHGDTEPFLRNVFTLDTCAP
IIGSQVLSFQKEAVMLEKWADFVRQCDPDIFTGYNINNFDFPYLINRAQHLKVNSFSYLG
RIKDIKSVIKDQVLQSKQMGRRENKHVNFEGRVPFDLLLVLIRDYKLRSYTLNAVSYHFL
QEQKEDVHHSIISDLQNGNPQTRRRLAVYCLKDAYLPLRLLDKLMCIINYMEMARVTGVS
LCCLLTRGQGVKVVSQLLRKAQEKGYLMPTHQSQGSDEQFEGATVIEPKRGYYNDPIATL
DYSSLYPSIIMAHNLCYTTLLLPATQHKLKLTNEKFSQTPTNAMFVKSSVRKGLLPEILE
NLLNARKLAKTELKNETDPFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSTT
AYGRAMIERTKQEVEQKYCIANGYKHDAVVIYGDTDSVMVKFGVKDMAEAMELGKDAADF
VSSKFIKPIKLEFEKIYFPYLLINKKRYAGLLFTKPDKYDKMDCKGLETVRRDNCPLVAN
MMNTCLQKLLIDRDPDGATDYAKQIISDLLCNRIDISQLVITKELTKTEYAAKQAHVELA
AKMKKRDAGTAPKLGDRVPYVFTSAAKGTPAYLKAEDPIYVLENSIPIDSNYYLENQLSK
PLLRIFEPILGDKAESLLLRGEHTRTKSVATSRVGALAAFTQKKETCMGCKAIMPAGREH
MALCQHCESREPELFQHELLLGRKLEEKFCRLWTECQRCQGSLHQEVLCTSRDCPIFYMR
KKVRIELDAQEKRIDRFGIPAW
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgaataagcggcctttttccggccctccgtccaagaaaaataaattcagggtagacgat
gatgatgacgaatacccaggatcttttgaagcggaacttgccatcatggaacaaatggac
gacgagtttcaagacccgtctcaggcctctggggagcctgaccctgcagatcctcaaatg
cgagtgagaggcccagatcaagaaaacacctgttccaaatggaatcggccagaccctcgg
ccattcaatcctcaaacagactcgctcactttccagcaaatagaagttgaccattatata
gggcagccgctggctggaatgccaggaagcaaaattggaccagtagcaataatgagaatg
tacggagtcaccatggaaggaaactctgtatgctgtcacgtgcatgggttttgttcctat
ttttttgtcactgcgccagaaaaattcaataactctcactgcaaaccattcaaggacgct
ttgaaccgagctgtattaacagatatgagatcgaaaaatgataaagttacagaagctgta
ctggtagtagaattaatctacaaacaatcgctgtacggatatgcaggcgaggacttggtg
ccttttataaaaatcacggtcgccctgccaaagcttgtggctccgtgtaaacgcttgttg
gagaaagaaatgatctttccaacattcagcgatcacgtgtaccaagcctttgaaactaac
atcgagtttgatatcagatttatggtggatacgcacgtggtaggctgttcatggatcaag
ctagtccctggtaaatggaaattaagaggccatccagggaatgacttgcctttgactagc
cgttgtcaattggaagtcgacgttgcctgggacaatttcattgctcatccaccagaagga
gaatgggccaaagttgcgcccttcagaatactaagttttgatattgaatgcgctggacgc
aaaggaattttccctgaggcaaatcacgacccagttattcagattgcgaacatgttgata
agacatggagacaccgaaccctttttgcggaatgtattcacattggatacttgcgcgcca
attatcggttctcaggtacttagttttcaaaaggaagcagtcatgctggagaaatgggca
gactttgtaagacagtgcgaccccgatatatttaccggctacaacatcaacaacttcgac
tttccctacctgataaatcgagcacagcacctgaaagtgaattccttcagctaccttgga
agaataaaggatataaaatctgtgataaaagatcaagtgttacaaagtaaacaaatgggc
aggcgagaaaataaacatgtcaatttcgaaggaagagtgccgttcgatttattgctggtc
ctcattcgagattacaagttacggtcgtatacgttgaacgcggtaagttatcactttctc
caagaacagaaggaagacgtacatcacagtattatcagtgatctacaaaatgggaatccg
caaacacgcagaagacttgcggtttactgtttgaaagatgcctacttgcctttgaggcta
ctggataagctcatgtgcattatcaactacatggaaatggcaagagtgacgggtgtctct
ctctgctgtttactaaccagaggacaaggggtcaaagttgtttcacagctgttgcgaaaa
gcgcaagagaaaggctatctaatgccaacgcatcagagtcagggaagtgacgaacaattc
gaaggagcaacagtcatagagccaaaacgtggatactacaatgatccgattgcgacattg
gattacagttctctatacccgagcataataatggcccataatctctgctacacaacgtta
ctacttccagcaactcaacacaaactgaaactaacgaatgaaaagttttcacaaacacca
actaacgccatgttcgtcaagtcctcagttagaaaaggactccttccagaaattttagaa
aatttattgaatgctagaaagttagctaaaacagagctaaagaacgaaaccgatccattc
aaacaaaaagttttggatggacgacagttggctctgaaaatatcagccaattctgtttat
ggtttcaccggagcacaagtaggcaaattgccttgtctggaaatatctagcagtacgaca
gcttacggtcgtgcaatgatagagcgaactaaacaagaagtggaacaaaaatactgcatt
gcaaacgggtacaaacacgacgctgttgtgatatatggcgacacggattccgtgatggtt
aagtttggtgtaaaggatatggcggaggcgatggagcttggaaaggacgcagctgacttc
gtttcgtcaaagttcataaaaccaatcaagctggaattcgagaaaatttattttccgtat
ctattgataaacaaaaaacgatacgcaggtttattattcactaagccagataaatacgat
aaaatggactgcaagggattggaaaccgtgagaagggacaactgtccgttggttgccaac
atgatgaacacttgtttgcagaaattgttgatagatagagatccggatggggcgacagac
tacgcgaaacaaatcataagtgatcttctctgcaaccgtatagacatttcgcaacttgtg
ataacaaaggaacttacaaagactgaatacgcggccaaacaggctcacgtcgagttggcg
gcaaaaatgaagaagcgagacgcaggaacggctccgaaactcggcgacagagttccgtac
gtttttacgtccgccgcaaaagggacaccggcatatctgaaagcagaggatccgatttac
gtcctcgaaaacagcattcctatagactcaaattactacctggaaaaccaactgtccaaa
cctcttctcaggatatttgaacctattcttggagacaaagctgaatctctattactgagg
ggagaacatacccgcaccaaatctgtagcgacttcacgtgtcggagcattggccgcattt
acgcaaaagaaggaaacttgtatggggtgtaaagccatcatgcccgcagggcgagagcac
atggctttatgccagcactgtgaatctcgcgaacctgaacttttccaacacgaattatta
ctcggcaggaagttggaggaaaaattctgcagattgtggacagagtgtcaaagatgccag
ggtagtttgcatcaggaagttttgtgcaccagccgagactgtccgattttttacatgagg
aaaaaagttaggattgaactggatgcacaggagaagcgaattgacagattcgggattcca
gcctggtag
DBGET
integrated database retrieval system
