Neurospora tetrasperma: NEUTE1DRAFT70543
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Entry
NEUTE1DRAFT70543 CDS
T03451
Symbol
NEUTE1DRAFT_70543
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
nte
Neurospora tetrasperma
Pathway
nte03020
RNA polymerase
nte03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nte00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NEUTE1DRAFT70543 (NEUTE1DRAFT_70543)
09124 Replication and repair
03420 Nucleotide excision repair
NEUTE1DRAFT70543 (NEUTE1DRAFT_70543)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nte03021
]
NEUTE1DRAFT70543 (NEUTE1DRAFT_70543)
03400 DNA repair and recombination proteins [BR:
nte03400
]
NEUTE1DRAFT70543 (NEUTE1DRAFT_70543)
Enzymes [BR:
nte01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NEUTE1DRAFT70543 (NEUTE1DRAFT_70543)
Transcription machinery [BR:
nte03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
NEUTE1DRAFT70543 (NEUTE1DRAFT_70543)
DNA repair and recombination proteins [BR:
nte03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
NEUTE1DRAFT70543 (NEUTE1DRAFT_70543)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
zf-C4pol
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
20829467
NCBI-ProteinID:
XP_009855279
JGI:
Neute_matA2_70543
UniProt:
F8N2G6
LinkDB
All DBs
Position
Unknown
AA seq
1761 aa
AA seq
DB search
MANLYFAHSSAPLRTIKEIQFGLLSPEEIKGMSVAHIVYPETMDETRTKPRDGGLNDPLL
GSVDRQFKCKTCGENMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNCSKVLADRN
DKEFAAAMRIRDPKVRFNRVWAVCKKKRRCENEVVKKSDDDEFNPLADAKGELPGHGGCG
NDHPTVRQQALTLYAQFDTKDEEGVKSKEKKIITPDMALNILHNMTESDMIDIGINISQA
RPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVRQAIQEGSPA
HIINDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVD
FSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQNGPNEHPGAKYVI
RSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYS
TFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQD
TLAGAYKLCRRDVFLTKEEVMNIMLWVPEWDGIIPVPAILKPRPRWTGKQIISMVVPKII
NLKNIDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIVHLCYNELGPSGAMDFL
NGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKQLTDMATNNQLEPLP
GMNIRETFENKVSKALNTARDKAGTSTESSLKDINNAVTMALSGSKGSSINISQMTALVG
QQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLID
TAVKTAETGYIQRRLVKALEDSAAQYDGTVRNSLGDIIQFVYGEDGLDGIAIENQPVDHF
TISNKAFDKRYRLDVMDEEVSSSELEALEYGKELASDPTVQELLDQEYEQLSVDRHMLRE
IQRTKGNNDTKMQLPLNIIRIIDTAKKLFKVDETARSDLTPKDVIPTVKAMLDRMIVVRG
DDPISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGELENRWSRSMVSPGE
MVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVASNIKTPSMMVYLDS
KAATQEEAKKMRSAVEHTSLRSVTAVTEIYYDPDITSTNIPEDYDLVESYFLIPDQSGDE
PDPIENQSRWLLRITLDRQKMLDKGLRVEDVAHRIKEVYKKDVAVVFSDNNAEEMVIRIR
VIKADDDKDEDGNKIIEDDVMLKRLEKHLLDGCTLRGVEGIERAFLNKGVKLIEAKDGSM
KHSKVDDECQEWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVFGIEGARAALMHEL
TAVLAFDGSYVNHRHLALLCDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEA
AAVGELDDCRGISENVMLGQMAPMGTGAFDVFLDPKMLETVISDNSRMGLMPGMTVKGSQ
LDGAATPYDTGSPMADSGFLGSYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVGGYGSGT
SYSSATSPRATSPFTPTSPFSYGGYSPSSPAAGYSPSSPLLDSSGRFASSPQFSPSSPSF
SPTSPMLRPGSPTSPSYSPTSPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPA
SPAFQATSPSYSPASPTWSPTSPDAYSPTSPSFQRSPGQQLSPTSPTGYSPTSPQYSPRT
PGRNNSGGNGDQYSPTSPSND
NT seq
5286 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctatactttgcgcactcgagtgcgcccttgcggaccatcaaggaaatccag
tttggtctgctgtcgcccgaggagatcaagggcatgagtgtggcccacatcgtctaccca
gagaccatggacgagaccaggacaaaaccccgcgacggcggtctcaacgaccctctcctg
ggctccgtagatcgtcagttcaagtgcaagacgtgcggcgagaacatgtccgagtgcccc
ggccatttcggtcacatcgagctggcccgacccgtctaccatccgggcttcatcaagcgg
gtgaagaagatgttggagattgtctgccacaactgcagcaaggttcttgctgacagaaat
gacaaagagttcgcggccgccatgaggatccgcgatcccaaggtccgcttcaaccgagta
tgggctgtgtgcaagaaaaagaggagatgtgaaaacgaggtagtcaagaagagcgacgat
gacgaattcaaccctcttgccgatgccaagggcgagctccccggccacggcggctgcggc
aacgatcaccccaccgtccgccagcaggccctcaccctctatgcccagttcgataccaag
gacgaggagggcgtcaagagcaaggagaagaagatcatcacccccgacatggcactcaac
attttgcacaacatgaccgagtctgacatgatcgacatcggcatcaacatctctcaagct
cggcctgaatggatgatcatcactgttctgcctgttccgccccctccagtccgccccagt
atttccatggacggtaccggcaccggtatgcgaaacgaagatgatttgacctacaagctc
ggcgatatcattcgagcaaacggcaacgttcgccaggctatccaggagggttctccggct
cacattatcaacgatttcgagaacctcctccagtaccacgttgccacctacatggacaac
gatattgctggtcaaccacaagctctgcaaaagagcggtcgtcctgtcaaggccattcgc
gcccgtctgaagggcaaggagggtcgtctgcgtggtaacttgatgggcaagcgtgtcgat
ttctctgcccgtactgtcatcacaggtgatgccaacatctcgctggatgaagtcggtgtg
ccccgtagcatcgcgcgcacgcttacatatcccgagactgtgacgccctacaatattggc
aaactcacccaatacgtccagaacggccctaacgagcatccgggtgccaagtatgttatt
cgctcagatggcagccgtgttgatctacgccatcagaggcggacaggtccgctacagctg
gaatatggctggaaggttgagcgccatctcatcgacggtgattacatcatcttcaaccgt
cagccctctttgcacaaggaatccatgatgggtcatcgtgtcaaggtcatgccctactcg
accttcagacttaacctttccgtcacatctccttacaacgccgatttcgacggtgatgaa
atgaaccttcacgttcctcaaaccgaagaaactcgtgctgaagtcaaggagctttgcatg
gttcctctcaacatcgtctcgccgcagcgtaacggtccgctcatgggtatcgtgcaggat
actttggctggtgcttacaagctttgtcgtcgtgacgtcttccttaccaaggaggaggtc
atgaacattatgctctgggtccccgagtgggacggcatcattcctgtccctgcaatcctc
aagcctcgtcctcgctggactggtaagcagatcatcagcatggttgttcccaagatcata
aacctcaagaacatcgacgaggatgatggtgagtgccctcttaaggataagggcattttg
atccaacaaggtgaggtgattttcggcttgatgacgaagaagattgtgggtgccgctagt
ggcggtatcgtccatctctgctacaacgagctgggtcctagcggtgctatggatttcctc
aacggctgccagagagtcgtcaactactggctccttcacaatggccacagcattggtatt
ggtgacaccattcccgacgctgcgaccatcgccaaggtccagacgcacattgacgatgcc
aaggcagaagtcaagcagctcacagatatggccaccaacaatcagcttgagccattgccc
ggtatgaacatccgtgagaccttcgaaaacaaggtctccaaggctctcaacacggcccgt
gacaaggccggtacttccactgagagcagtttgaaggatatcaacaacgccgtaaccatg
gctctgtctggttccaagggttcttccatcaacatctctcagatgactgccttggtcggt
cagcagattgtcgaaggcaagcgtattcctttcggcttcaagtaccgcacactgccacat
ttcacaaaggatgattactcacccgaagcccgtggtttcgtcgagaactcgtaccttcgt
ggtcttactccttcagagtttttcttccacgccatggctggtagagaaggtttgatcgat
accgctgtcaagacagccgaaactggttacattcagcgtcgtttggtcaaggcccttgaa
gattcggctgcgcagtacgatggtactgttcgcaactcactgggtgatatcatccagttc
gtctacggtgaagatggtctcgacggtattgccatcgagaaccagcctgtcgaccacttc
acgatatccaataaggctttcgacaagcgttatcgtctcgatgtcatggacgaggaggtt
tcctcgagcgagcttgaggcgctggaatacggaaaggagcttgccagtgatcccactgtt
caggagcttcttgaccaggaatacgaacagctttcggtcgatcgccacatgcttcgtgag
atccagcgcacgaaaggcaacaatgacacgaagatgcagctccctcttaacatcattcgt
atcattgatactgccaagaagctgttcaaggtggatgagaccgctcgcagtgaccttacc
cccaaggatgtcattcctacagttaaggccatgcttgatcgcatgatcgttgtcagagga
gacgatcctatttccaaggaggcagactacaacgccacgatcctgttcaaggcccagctt
cggtctcgcttggcgttcaagcgtcttgctgtccaagataggatcaacaagttggccttc
aaccacattctcggcgagctcgagaaccgttggtcgaggtcgatggtttctccgggtgaa
atggtcggtgtgttggctgcccagtctatcggtgaacccgccacccagatgacactcaac
actttccatttcgccggtgtgtcctccaagaacgtcacccttggtgtgccgcgtctaaag
gaaattcttaacgttgcttcgaacatcaagactccttccatgatggtctatctcgactcc
aaggcagcgacccaggaggaggccaagaagatgcgcagtgctgtcgagcacacgagtctt
cgctccgttacggctgtcactgaaatctactatgatcccgatatcacatcgaccaacatc
cccgaggattacgatttggtcgagtcttacttcctcattcccgatcagagcggcgacgag
ccagatccgattgagaaccagtcccgttggcttctgagaatcactctcgatcgtcagaag
atgctcgacaagggtctccgcgttgaggacgttgctcaccgcatcaaggaggtttacaag
aaggatgttgcagttgtcttctccgacaacaacgctgaagagatggtcatccgtatccgt
gttattaaggcggacgatgacaaggatgaagatggtaacaagatcatcgaggacgatgtg
atgctcaagcgtcttgagaagcatctcctggacggctgcacacttcgtggtgtcgaaggc
attgagcgtgccttcttgaacaagggtgttaagctgatcgaggccaaggatggttccatg
aagcactccaaggtggacgatgagtgccaagagtggtaccttgatacgcaaggtacctct
cttcgtgaggtcttgactgtcgagggtgttgataccaagcgcaccactaccaacgacttg
tggcaggttgtcgatgtcttcggtatcgagggagctcgcgctgctctgatgcacgagttg
acggctgtgttggctttcgacggttcgtacgttaaccatcgtcacttggcgcttctttgc
gatgtgatgacatacaggggcagtatcgccgccgtcacacgtcacggtatcaaccgcgct
gatactggtgcgctcatgcgttgctctttcgaggagactgtcgaaattctcctggaagct
gccgccgttggtgagcttgatgactgccgtggtatttccgagaacgttatgttaggccag
atggctcccatgggtaccggcgcctttgacgttttcctcgatcccaagatgttggagacc
gtcatctctgacaactctcgcatgggtctcatgccgggcatgaccgtgaagggcagtcag
ctggatggcgcggctacgccttatgatacaggctccccgatggccgacagtgggttcctt
ggaagttattcgcctactatgggcaacttctctcctatccagggcgctggatcggacagc
ccgacgaacaatggcttcggcaccgactacggtggcgttggcggatacggttctggtact
tcctactcttcggctaccagccctcgtgccaccagccccttcacacccacgtcaccgttc
agctatggcgggtactcgccatcgtcgcccgcggctggctactcgcccagctcacctctc
ctcgactcttctggtcgtttcgcttccagcccacaattcagtccctcgtcgccgtcgttc
tcgccaacttcgccgatgctgcgccctggaagcccgaccagcccgagctacagccctacc
tccccgagttactcgccggcatcgccagctgccgccaggtactcgcccacctcccccgcc
caacaattctctccgacgtcaccttcatactcccccacgagtccgagctacagcccggcc
tcgcccgctttccaggctacctcgccaagctactctccggcgtcgcctacctggtcgcca
acctcgccggacgcttactcgcccacgagcccgtcgttccagcggtcccctggtcagcag
ctgtcccctactagcccaacgggttactcgccgacgtcgccgcagtactcgccgcggacg
ccgggacgtaataactcggggggcaacggggatcaatattctcccacttcgccatcgaat
gattga
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integrated database retrieval system
