Nicotiana tomentosiformis: 104120109
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Entry
104120109 CDS
T05025
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104120109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104120109
Enzymes [BR:
nto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
104120109
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104120109
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
AAA_24
ABC_tran
FtsK_SpoIIIE
ATP_bind_1
MMR_HSR1
DUF1611
AAA_29
Motif
Other DBs
NCBI-GeneID:
104120109
NCBI-ProteinID:
XP_009630103
LinkDB
All DBs
Position
Unknown
AA seq
439 aa
AA seq
DB search
MAYGGTNVNPLAATGGSTTVRQVKLDKECELRIETSLDSPLRLRLLTGTAEIFGTEIPPE
IWLTIPPRLKFAVFTWYGATIEMDGPTETDYTADETPMISYINVHAVLDGRRNRAKASPS
DSDTSQGPRVVVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCVAATP
IELPIDPVEGIPLEMPMVYFFGHVTPSANIDHYKVLVKELAQTLERQFSGNAESRASGMV
INTMGWIEGVGYELLLHAIDTFNATVILVLGQEKLCSMLKDVLKNRPNVDVVKLQKSGGV
VSRNAKVRQKARGYRIREYFYGPSNDLSPHSNVVNFGDLFIYRIGGGPQAPRSALPIGAE
PAADPTRLVPVSINRDLLHLVLAVSYANEPDQIISSNVAGFIYVTDVDMHRKKITYLAPC
AGELPSKYLIVGTLTWIEN
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcttatggaggcacaaatgtcaatccattggcagcaacaggtggttcaacaactgtg
agacaggtgaagctggataaagaatgtgagctccgaattgaaaccagccttgactcgccc
ctccgtctccgactcctcactggaacagctgagatttttgggactgaaatccctcctgag
atctggcttaccatccctccaagactcaaatttgctgtttttacttggtatggagcgaca
atcgagatggatggccccactgaaactgattatacagcagatgagacgccgatgataagt
tatataaatgttcatgctgtacttgatggacgaagaaatcgtgccaaagcttcacctagt
gattctgacacttctcagggcccgagggtagtcgtcgtgggacctacagattctggcaag
agtactttatcaaggatgcttcttagttgggcagcaaaacagggatggaaacctactttt
gtggatttggacatcggtcaaggatcgataactattccaggatgtgttgctgctacgcca
attgagttgcctattgatccagttgaaggaattccgcttgaaatgcctatggtctacttc
tttggtcatgtgactcctagtgccaacatagatcactacaaggtactcgtcaaggagcta
gctcagactctggagaggcaattttctggcaatgctgaatctcgagcttcaggcatggta
ataaatacaatgggatggatagagggagttggttatgagttgctactccatgcgattgat
acattcaatgccaccgttattcttgtcttgggtcaggaaaaactttgtagcatgctaaaa
gatgtattgaagaatcggcctaatgtggatgtggtgaaacttcaaaagtctggtggtgtt
gtatcaaggaatgcaaaagtacgccagaaagcaaggggctacagaataagggagtacttt
tatggcccttcaaatgacctctcaccacattctaatgtagtaaacttcggtgacttgttc
atctaccgaattgggggtggaccacaggctccacgctcagctttacctattggtgcagag
cctgctgcagatcctacaagattggttcctgttagtatcaaccgtgacttgcttcatttg
gttcttgccgtctcgtatgccaatgaaccagatcaaataatttccagtaatgttgccgga
ttcatctatgtcacagacgttgacatgcataggaaaaagataacatatcttgcaccatgt
gctggggaacttccgagcaaatacctaatcgtgggaaccttaacatggattgaaaactga
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