Neodiprion virginianus: 124301550
Help
Entry
124301550 CDS
T09046
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
nvg
Neodiprion virginianus
Pathway
nvg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124301550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvg03021
]
124301550
Enzymes [BR:
nvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124301550
Transcription machinery [BR:
nvg03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
124301550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF2201_N
Motif
Other DBs
NCBI-GeneID:
124301550
NCBI-ProteinID:
XP_046612693
EnsemblRapid:
ENSNVRG00000008741
LinkDB
All DBs
Position
3:8023664..8034479
Genome browser
AA seq
1697 aa
AA seq
DB search
MYCHRKMYKQLKSGMTMSAKHLVLENLEFSMFTNEDIRNLSVTKISTPLSFNILGNPLKG
GLYDPVLGPVSEKSDPCGTCGGNITKCSGHFGHIDLPLPVVNPLFHKQLASIIKLTCLRC
FKLQVPEPMKLLLVAKIKLLDEGFVSGLSDLEQEVQSIIAAGGDGTGTVEFVKEVIEAHV
ERLHNRQRLNHIVPLLAEENRSNARNVNMQRWMHVENILRQFQYVPICIHCQDSIPKIST
FRNRIMTTKSANDELDASKIKRGIVRRLETVLMMPDQTQKYLRELWNTERDVLKIIMPCL
STVHTEYPTDILFFSIIPVLPPIVRPVNYVNGQLIEHPQSQVYKAIIQDCLVLRNIIQTI
QDGDTSKLPEEGRIVFEQIRGNSPSEKLHNAWQQLQANVDHLMDRDVNKTTESANCQGLK
QVIEKKEGVIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFALKLTYPVPVTPWNVA
ELRQMIINGPNVHPGAVLVEGEDGSTTRISASAAVQRESIAKRLLTTSVKATKFFNGVKI
VHRHLHNGDILLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAH
FPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHMVSGVRLTLRGKFFSREDYMQLV
YCALSDIQGDITLLPPAIIKPKLLWSGKQLLSTVIINVTPRGKAKINLAASAKIGPKAWE
ARKPRRWKCGTEFSDPKTMSEAEVVIRNGELLTGVLDKIHYGATPYGLIHCVYELYGGTY
SSRMLSAFGKLFQAFLQRDGFTLGIEDILILSNADEERTKFIESCRKIGESTQKSVLELP
EDTPMTEVKSKIQESYLINPKFQAQIDRKYKTALDVYTNDINKTCLPAGLLKKFPDNNLQ
LMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFAAYDPMPRAGGFIDGRF
MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLTVSYDSTVRDSDGSLV
QLYYGEDGLDVPSSQFLKKEQLDFLVHNRNAIVEKELLSRLKEDLSTEHILKSGRKMQRW
MKKHGDPLQKRRNSEFTKFSEKNRLSDPKYNKINEVCGRSKGALRLMREWVNTDEETKES
YKCSRCPDPVFSKYKQDSNYGVLTERIEGLINDYISKRKVENSADISEDELRDLLSFKVM
KTLCQPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKT
PSMEIPFRPNLENLEKQSNELRLKLTRCTLSNVLRSIDVDGRLEIEPQRRMTYKLTIKFL
PHKSYKREYCVKRKYVLQATEYLFFRELFKEIKKAAQVPGALLYTEENKEPANDDQLDAD
DPESVPSSQTKGRLDFGEMHESSDEDEAAEDADATAARSLSRHQENQEYDDPEETSDDSD
ENEDEKMRDDKTVATESNRAEETEKSEFENLLAEKRKKLIVDMYPHAIEYDFDDKKYLSC
ELKFWLPLKMSKLDLSTIIRSVAEKVVLWETPQIKRAFTFQNLNNETVLKTDGLNIVEMF
KYNEILDLNRLYSNDIYGISQTYGIEAANRVIVKEVKDVFKMYGITVDPRHLLLIADYMT
FDGTFQPLSRKGMENSASPLQQISFESSLTFLKNATLHNKRDDLVSPSSRLIIGQPCKSG
TGSFDLMHRMERYILGQ
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgtattgccatagaaaaatgtacaagcaattaaaatcaggcatgacaatgtctgcaaaa
catctggtcctagagaacctggaattttcaatgtttactaacgaggatattcgcaactta
agcgttacaaaaatcagcacacctttgtctttcaacattttgggcaatccactgaaaggc
ggactctatgacccggtgttaggtccagtgagcgaaaagtcagatccctgtggaacatgt
ggcggaaatataacaaaatgttcgggacactttggacacatagacttgccattgcctgtg
gtaaatccgttattccacaagcagctggctagcatcatcaaattgacttgcttgcgttgt
ttcaaactgcaagtaccagagcctatgaaactgttgttggtagctaagataaaactgttg
gatgaggggtttgtctcagggcttagtgatttggaacaagaagttcaatccattatagct
gccggcggcgatggtactggaacagttgaattcgttaaagaagttattgaggctcatgta
gagaggcttcataatcgtcagaggttaaatcacattgtgccccttcttgctgaagagaat
cgttctaatgcaagaaatgttaatatgcaaagatggatgcacgtcgaaaatatactcagg
caatttcaatatgtacctatctgcatacattgtcaagatagtatcccaaaaattagtacg
ttcagaaaccgaattatgactactaaatcagccaatgatgagctggatgcaagcaaaatt
aaacgaggaatcgttagacgactggaaactgttctgatgatgccagaccagacgcaaaag
tatttgcgtgagctctggaatacagaaagagatgtattgaaaataataatgccttgtttg
agtacagtgcatacggaatatccaacagacattctgttcttcagtataatacctgtactt
ccaccgatcgtaaggccagttaactacgtcaatggacaactgatagaacatcctcaatcc
caagtctataaagctattatacaggattgcttggtgctcaggaacattatacaaacaatt
caagatggagacacttcaaaacttcccgaagaaggccgaattgtttttgaacaaataagg
ggaaattcgccgtcggaaaaacttcataatgcttggcagcagctccaagcaaatgtcgat
catctgatggatcgtgatgtaaataaaacgacggaatcagcaaactgccaggggctgaaa
caggtgattgagaagaaagagggtgtcattcgcatgcacatgatggggaaacgggtgaat
tttgcagcaagatcagtcatcactccagatcctaatttaaacatcgacgaaattggtatc
cccgaagcttttgctttgaagctgacttacccagttccggtaacaccttggaatgttgcc
gaattacgacaaatgataattaacggaccaaacgtacatccaggggcagttttggtggag
ggtgaagatggctcaacaactcgtataagcgcgagtgcagctgtgcaaagagaatcaatt
gcaaaacgacttttgactacaagcgtcaaagcgaccaaattttttaatggcgtaaagata
gttcaccgtcatttgcacaatggagatatcttgcttttgaatcgtcaacctactttgcat
aagccaagtatcatggcccataaagccaggatattgaaaggggagaaaacgttgcgcctt
cactatgccaattgtaaagcttacaacgctgactttgacggagatgaaatgaatgcgcat
tttccacaaaacgaacttgctcgaagtgaaggatacaatatagccaacgtttctaaccag
tacctcgtcccgaaagatggtacaccattaagcggtttgattcaagatcacatggtttct
ggagtacgtttgactctcagaggaaaattcttttcaagagaagactacatgcagttagtt
tactgcgcattatcagatattcagggtgatataacgctattaccacctgccattatcaaa
ccaaagttattgtggtcaggcaaacaattgttatcaacagtcataattaatgttacacca
cgaggcaaagcgaagattaatcttgcagctagcgcaaagattggcccaaaagcatgggaa
gctaggaagccgcgacgttggaaatgtggcaccgaattcagtgatccaaaaacaatgtca
gaagctgaagtagttatacgtaatggcgaactgctaaccggtgttctcgacaagattcat
tacggtgctacaccttatggcttaatacattgcgtatacgagctttatggtggtacatac
tcaagcaggatgctgagtgcgtttggaaaattattccaagcatttctgcagcgagatggc
tttactttgggaatagaagatatcttaattctttcaaacgctgatgaagaacgtacgaaa
ttcatcgagtcatgtagaaagataggtgaaagcacccagaaatcagtgcttgagttgcct
gaagacacaccgatgacagaagtcaaatcaaaaatacaagaatcctatttgataaatcct
aagttccaagcgcaaatcgatcgtaaatacaaaactgctctggatgtctatacgaatgac
ataaacaaaacatgcctgccagctggactccttaaaaaatttccggataataatttgcaa
cttatggttcagtccggagcaaaaggttcgactgttaacaccatgcagatttcttgtcta
cttgggcaaatcgaattggaaggaaagagaccgccgcttatgatcagtggcaaaagtctt
ccctctttcgctgcttatgatccaatgccaagagcaggcggctttattgacggtcgtttt
atgacgggaatccaaccccaagagttcttcttccattgcatggcaggcagagaagggctg
attgatactgcggtgaaaaccagtagatctggatacttgcagaggtgtttaattaagcat
ttggaaggcttaacagtcagttacgactcaaccgttcgcgattctgacggcagtttagtt
cagttatattacggagaagatgggctcgatgtaccgagttctcaatttctgaaaaaagaa
caactggattttttggtccataatagaaacgcgattgttgaaaaggaattgctaagccgt
ctcaaagaggatttgagcactgagcacatcttgaaatcagggcggaaaatgcaaaggtgg
atgaagaaacatggtgatcctttacaaaagcggcgcaatagcgaatttaccaaattttcc
gaaaaaaatcgactaagtgatcccaagtataataagatcaatgaagtttgcggcagaagc
aagggtgcactacgtttgatgagagaatgggtaaatactgacgaagaaactaaggaaagt
tacaagtgctcacgatgccctgaccctgtattttcaaaatacaaacaggactctaactat
ggagttctaacggaaagaatagaaggcttgataaacgattatatctcaaaacgaaaagtc
gaaaactccgcagatatatccgaagatgaactcagagacctcttatcattcaaagtaatg
aagaccctttgccagccaggagagcctgtaggattactagcagcgcaatcaattggagag
ccgtcaacgcagatgacgttgaatactttccattttgcgggacgtggtgaaatgaacgta
accctcggaattccaagattacgagaaatccttatgatggcctcgaagaatataaagaca
ccttcaatggaaattccgtttaggccgaatcttgaaaatctagaaaaacaatcgaacgaa
ttaagattaaagttaaccagatgcactttgtcaaacgtcttaagaagcattgatgtagat
ggaagattagaaatcgaacctcagagaaggatgacttataagctgacgataaaattctta
cctcacaaaagctacaaacgagaatactgtgtgaaacgcaagtacgttttacaggcaacg
gaatatttattcttcagagaactgtttaaggaaataaaaaaggcagctcaagtacccgga
gcattgctgtacactgaggagaacaaggaaccagcgaacgacgatcaactagacgcagat
gaccctgaaagtgtgcctagcagtcagactaaagggagattagatttcggggaaatgcat
gaatcttctgatgaagatgaagctgccgaagacgcagatgcgaccgcagctaggtcactt
tccagacaccaagaaaatcaggaatatgacgaccctgaagaaacgagtgatgactccgac
gaaaacgaagacgagaaaatgcgagatgacaaaactgtggcaactgaatcaaacagagct
gaagagacagagaagagtgagttcgaaaatctgcttgcagagaaaaggaaaaaactaatt
gtcgacatgtacccccatgctattgagtacgattttgatgacaagaaatatttatcatgc
gaattaaagttctggctacctttgaaaatgtcaaaactggacttatctacgatcattaga
tcagtcgcagaaaaggtcgtactatgggaaacgcctcagataaagcgagcatttacattc
caaaatctgaacaatgaaactgttctgaaaacagatggattaaacattgtggaaatgttc
aagtacaatgaaatcctagatctcaacagattatactctaatgacatatacgggatttcg
caaacctacggcatcgaagcagcgaatagagttatagtaaaggaagtgaaggatgtgttt
aaaatgtacggaattactgttgatccacgacatttacttctgatcgccgactacatgact
tttgacggaactttccaaccgctaagtcgtaaaggaatggagaactctgcatctcccctc
cagcaaattagttttgagagttcactcaccttcctgaaaaatgctacgctccataacaaa
cgagatgaccttgtttcaccatccagtcgcttgatcatcggtcaaccttgcaaatccgga
acaggatcatttgatttgatgcatagaatggaaaggtacattctgggtcagtga
DBGET
integrated database retrieval system
