KEGG   Nitrososphaera viennensis: NVIE_008470
Entry
NVIE_008470       CDS       T03200                                 
Symbol
rpoK
Name
(GenBank) DNA-directed RNA polymerase subunit K
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
nvn  Nitrososphaera viennensis
Pathway
nvn03020  RNA polymerase
nvn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nvn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NVIE_008470 (rpoK)
  09124 Replication and repair
   03420 Nucleotide excision repair
    NVIE_008470 (rpoK)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nvn03021]
    NVIE_008470 (rpoK)
   03400 DNA repair and recombination proteins [BR:nvn03400]
    NVIE_008470 (rpoK)
Transcription machinery [BR:nvn03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     NVIE_008470 (rpoK)
  RNA polymerase III system
   RNA polymerase III
     NVIE_008470 (rpoK)
  RNA polymerase I system
   RNA polymerase I
     NVIE_008470 (rpoK)
DNA repair and recombination proteins [BR:nvn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      NVIE_008470 (rpoK)
SSDB
Motif
Pfam: RNA_pol_Rpb6 CABS1
Other DBs
NCBI-ProteinID: AIC15066
UniProt: A0A060HNC6
LinkDB
Position
696453..696866
AA seq 137 aa
MVIKRFTKKPAARKSAVSKTKGKKDAEAEVEETKKSNRPADEVVTYSEQEYELKEVPAQG
NKILIGLPWLTRFERARITGARALQLSLGAPPLIKPDGANTSIALAMLEVEKKALPISIR
RVLPNGMYQDIPIDWMK
NT seq 414 nt   +upstreamnt  +downstreamnt
ttggtaatcaagcgctttacaaaaaaacctgctgcacgcaagtctgccgtgtccaagacc
aagggtaaaaaggacgcggaggctgaagtagaggagaccaagaagtcaaaccgcccggcc
gacgaggtggtgacttattccgagcaagagtacgagctgaaagaagtcccggcgcaggga
aacaagatcctgattggcctgccgtggctcacgaggtttgagcgcgcaaggataacgggg
gcccgcgcattgcaattgtcgctgggcgcgccgccgctgataaagccagacggcgcaaac
acgtccatcgcgcttgcgatgctggaggtcgagaaaaaggcgctcccgatatccatacgc
cgcgtcctgccaaacggcatgtaccaggacatcccgatcgactggatgaagtaa

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