Neogale vison (American mink): 122916461
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Entry
122916461 CDS
T08764
Symbol
MSH6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
nvs
Neogale vison (American mink)
Pathway
nvs01524
Platinum drug resistance
nvs03430
Mismatch repair
nvs05200
Pathways in cancer
nvs05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122916461 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
122916461 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
122916461 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
122916461 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nvs03400
]
122916461 (MSH6)
DNA repair and recombination proteins [BR:
nvs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122916461 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
HORMA
MUM1-like_PWWP
WPP
Motif
Other DBs
NCBI-GeneID:
122916461
NCBI-ProteinID:
XP_044119830
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Position
8:71279709..71303826
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AA seq
1361 aa
AA seq
DB search
MSRQSTLYSFFPKSPALNNANKSSVRASGEGGGAAAAXRGLPFSRRGCGLERGRAWXPLA
GSASPPETRNVNGGLRRPAAPAVPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFI
REKGKSVRVHVQFFDDSPTRGWVSRRLLKPYTGSKSKEVQKGGHFYSSKPEILRAMQRAD
EALNKDKIERLELAVCDEPSEPEEEEEMEVGATYSSDKSEDDDHEIESEEEIRPKVQGSR
RSSRQIKKRRVISDSESDIGGSDVEFKPDGKEEGSSDEISSGVGDSDSEGLDSPVKVASK
RKKMVTGNGSLKRKSSRKEMPLATKRSTGILSETKSALNAFSAPQNSESQAHVSGGCDDN
SRPTIWYHETLEWLKEDKRRDLQRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQ
NFDLVIFYKVGKFYELYHMDALIGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYK
VARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYL
LSLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKG
NLSTETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFKEKLNEDSGVVLPQVL
KGMTSESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSA
TRPGAVFAKGNQRMVLDAVTLSNLEIFMNGTNGSTEGTLLEKIDSCHTPFGKRLLKQWLC
APLCSPYAINDRLDAIEDLMAVPDKISDVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPD
SRAIMYEETTYSKKKIIDFLSALEGFKVICKIIEIMEEIVDNFKSKILKQVVTLQTKTPQ
GRFPDLTIELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQR
SRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLI
NAEERRDISLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVI
LLPEEGTPPFLDLRGSRHPCITKTFFGDDFIPNDILIGCEEEEENGKAYCVLVTGPNMGG
KSTLMRQAGLLAVMAQMGCYIPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS
ILKHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQN
VAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEIIQKGHRK
AREFEKMTQSLRLFREVCLASERSTLDAEAVPKLLTLIKEL
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctgtacagcttcttccccaagtcgccagcgctgaataatgct
aataagtcctcggtcagggcttcaggtgaaggcggcggtgccgccgccgccnaccggggc
ctcccgttctcccggcggggatgcggcctggagcgaggccgggcctggnngcccttggca
ggctccgcgtcgccgccggagacgaggaacgtcaatggagggctgcgaagacctgccgcc
cctgcggtccccgccagttcttgtgacttctcaccaggtgatttggtttgggccaagatg
gagggttacccctggtggccttgcctggtatacaaccacccttttgatggaacattcatc
cgtgagaaaggaaagtctgtccgagttcatgtacagttttttgatgacagcccaacaagg
ggctgggttagcagaaggctattaaagccatatacaggttcaaaatcgaaggaagtgcaa
aaaggaggtcatttttacagttcaaagcctgaaatactcagagcaatgcaacgtgcagat
gaagccttgaataaagacaagattgagaggcttgaattagcagtgtgtgatgaaccctca
gaaccagaggaagaagaagagatggaggttggtgcaacttactcatcagataagagtgaa
gatgatgatcatgaaattgaaagtgaagaggaaatacggccaaaggtccaaggatctagg
cgaagcagccgccaaataaagaaaagaagggtcatatcagactcggagagtgacattggt
ggttctgacgtggaattcaagccagatgggaaggaggaaggaagtagtgatgaaataagc
agtggagtgggggacagtgatagtgaaggcctggacagtcctgtcaaagttgcttcaaag
cggaagaaaatggtgactggaaatggctctctcaaaaggaaaagttcaaggaaggaaatg
cccttggccaccaaacgatcaactggcattttatcagaaaccaagagtgctttgaatgct
ttctctgcccctcaaaattctgaatctcaagcccatgttagtggaggatgtgatgataat
agtcgccccactatctggtatcatgaaaccctagagtggcttaaggaggacaagagaaga
gatctacagaggaggcgacctgatcaccctgattttgatgcatccaccctctatgttcct
gaggatttccttaattcctgtactcctgggatgaggaagtggtggcagattaagtctcag
aactttgatcttgttatattttataaggtgggcaagttttatgaactataccacatggat
gctcttattggagtcaacgaactaggactagtgttcatgaaaggcaactgggctcattct
ggtttccctgaaattgcctttggccgatattctgattctctggttcaaaagggctataaa
gtagcacgagtggaacagacagagaccccggagatgatggaggcacgatgccgtaagatg
gcacatatatctaagtatgatagagtggtgaggagggagatctgtagagtcattactaag
ggtacacagacctacagtgtattggaaggtgatccctctgagaactatagtaagtatctt
cttagcctcaaagaaaaagaggaggattcttctggccacactcgggtgtatggagtatgc
tttgttgatacctcactgggaaagtttttcataggtcagttttcagatgatcgccattgt
tccagatttaggactctagtggcacactatcctccagtacaagtcctgtttgagaaggga
aatctctcaacagaaactaagatgattctaaagggttcattatcctcctcacttcaggaa
ggtctgataccaggctcccaattttgggacgcagccaaaacattgagaacgctccttgaa
gaaggatattttaaggaaaagttaaatgaggacagtggggtagtattaccccaggtgctt
aaaggtatgacctcagagtctgattctcttgggttgacaccaggagaaaagagtgaattg
gccctctctgctctaggtggttgtgtcttctacctcaaaaaatgccttattgatcaagag
cttttatcaatggcaaattttgaagaatacattcccttggattctgacatggtcagtgct
acaagacctggtgctgtttttgctaaaggcaaccagcgaatggtgctagatgctgtgaca
ttaagcaacttggagattttcatgaatggaacaaatggttctactgaagggacccttcta
gaaaagattgatagttgccatactccctttggtaagcggcttctcaagcagtggctttgt
gctccactctgtagcccttacgctatcaacgatcgtctagatgctatagaagacctcatg
gctgtgcctgacaaaatctctgatgtggtagaccttctgaagaagcttccagaccttgaa
aggctgctgagtaaaattcataatgttgggtctcccctgaagagccagaaccacccagat
agcagggctatcatgtatgaagaaaccacatacagcaaaaaaaagattattgattttctt
tctgctctagaaggattcaaagtaatatgcaaaattatagagattatggaagaaatcgtc
gacaactttaagtctaaaatccttaagcaggtcgttactctacagacaaaaactcctcag
ggccgtttcccagatttgactatagaactgaaccgatgggatacagcctttgaccatgag
aaggctagaaagacgggactaattactcccaaagcaggatttgactctgattatgaccaa
gctcttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaacagcgc
agtcgaattggctgtaggaccattgtctactgggggattggtaggaaccgttaccagttg
gaaattccagagaatttcatcactcgtaatttgccagaagagtacgagttgaaatctacc
aagaagggctgtaagcgatactggaccaaaactattgagaagaagttggctaatctgata
aatgctgaagaacggagagacatatcattgaaggactgcatgcggcgactgttctataac
tttgataaaaattataaggactggcagtctgctgttgagtgcatcgcagtattggatgtc
ttactgtgcctggctaactacagtcgagggggtgacggccctatgtgtcgtccagtaatt
ctgttgccagaagaaggtactcctcccttcttagaccttagaggatcacgtcatccctgc
atcacgaagactttttttggagatgactttatacctaatgacattctaataggctgtgag
gaagaggaggaaaatggcaaagcttattgtgtgcttgttactggacctaatatggggggc
aagtctacgctcatgagacaggctggcctgttagctgtaatggcccaaatgggttgttac
atacctgctgaagtatgtaggctcacaccaattgatagagtatttactagacttggtgcc
tccgacagaataatgtcaggtgaaagtacgttctttgttgaattgagtgaaactgccagc
atacttaaacatgcaacggcacattctttggtccttgtggatgaattggggagaggtact
gcaacatttgatggaacagcaatagcaaatgcagttgttaaagaacttgctgagaacata
aagtgtcgtacattgttttccacccactaccattcattagtagaagattattctcaaaat
gttgcagtgcgcctgggccacatggcatgcatggtagaaaatgaatgtgaggatcccagc
caggagactattacctttctctataaattcattaagggagcttgtcctaaaagctatggc
tttaatgcagcaaggcttgctaatcttccagaggagattattcaaaagggacatagaaaa
gcaagagaatttgagaagatgactcaatcactgcgattatttcgggaagtctgcctggct
agtgaaaggtcgactctagatgctgaagctgtccctaaattgctgactttgattaaggaa
ttatag
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