Nematolebias whitei (Rio pearlfish): 119408971
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Entry
119408971 CDS
T08042
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119408971 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119408971 (clp1)
Enzymes [BR:
nwh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
119408971 (clp1)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119408971 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
AAA_18
AAA_16
MMR_HSR1
TniB
AAA_22
Motif
Other DBs
NCBI-GeneID:
119408971
NCBI-ProteinID:
XP_037531764
LinkDB
All DBs
Position
4:complement(19362440..19366519)
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AA seq
441 aa
AA seq
DB search
MATEGLEKTSEDAEASGKVYTRFDLEKETELRFEVEAGDGSDQVELELITGLAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCTVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
DNERGPRVMVVGPMDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSIQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASTFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERT
KECRRETRDEKIREYFYGFRGLSFFPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSVDDRDEDARKSIVESPVCGFIVVTHVDVQTQVMKVLSP
SPRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagggtttggaaaagacgagtgaagatgctgaagcatcggggaaggtgtat
accaggttcgacctggagaaggagactgagcttcggttcgaggtggaggcaggagatgga
tcagatcaagtcgagctggaactcatcacaggactggctgaagtgtttggatccgagctg
aaccgcaacaagaagtacacattcggaccaggatccaagatcgcagttttcacctggcaa
ggttgcactgtgaatctttatggaaaacctgaagtggcatacgtgtccaaggatactcct
atgctgctctacctaaacactcacgctgccctggaacagatgaggaaacaagcagagcga
gacaacgagaggggaccgagggtaatggtggtgggacctatggatgttgggaagtccact
gtgtgtcgactgcttctcagctatgctgtgagggttggaaggaggccaacacttgtggaa
ctagatgttggacagagtggggtgtctgtccctggaacggtgtcggcactgtgcattgag
cgcccggcagacgtggaggagggtttctccattcaggctcctctggtgtaccactttggc
tctactactccagggaccaatatcaaactttacaacaagctgacgtcgtgtttggctgag
gtgttttctcagcgctgcgaggtgaaccgtaaggccagcgtgggaggttgtatcatcaac
acttgtggctgggtgaagggttctggatatcaggctctggtccactgtgcctctaccttt
caggtggacgtggtgttagtgttggaccacgagaggctgtacaatgagctcaaacgagac
ctgcctcactttgtgcgtgttgttctcctgcccaaatccggcggagtggtggagcgcaca
aaggagtgccggcgggaaacccgtgatgaaaagatccgagagtatttttacggcttccgt
ggactgtccttcttccctttctcttttgaagtccgcttctcagatgtccgcatctacaag
atcggtgctccgtccatcccagactcgtgcttgcctctgggaatgtctcaagacgatacg
cagctgaagctcgtgcctgtgacgccggggagagatctgacgtatcacgtcctgagtgtg
agcagcgtggatgatagggacgaagacgctagaaagagtatcgtggagagtcctgtgtgt
ggttttatcgtagtgactcatgtagacgttcagacacaagtgatgaaggtgttgtcccct
tcacccagacccctgcccagacacacactgctcatcatggacatccgctttatggacatg
aaataa
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