Nematolebias whitei (Rio pearlfish): 119422209
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Entry
119422209 CDS
T08042
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03030
DNA replication
nwh03410
Base excision repair
nwh03420
Nucleotide excision repair
nwh03430
Mismatch repair
nwh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119422209 (pold1)
03410 Base excision repair
119422209 (pold1)
03420 Nucleotide excision repair
119422209 (pold1)
03430 Mismatch repair
119422209 (pold1)
03440 Homologous recombination
119422209 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nwh03032
]
119422209 (pold1)
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119422209 (pold1)
Enzymes [BR:
nwh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
119422209 (pold1)
DNA replication proteins [BR:
nwh03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
119422209 (pold1)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
119422209 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
119422209 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
divDNApol
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
119422209
NCBI-ProteinID:
XP_037545498
LinkDB
All DBs
Position
15:27196280..27213100
Genome browser
AA seq
1105 aa
AA seq
DB search
MDIKRRNGGPHLGGASQAKRGKTAGEWEDSPSQFEEELSMFDDFEMDAEEMEGQAGHDVI
PVGDLFSADLNPRWRRPHAPTLNPSSDTLIFQQIDLDYYLGASVAGMPGQSQGKVPIIRM
FGVTDSGNSVCCHVHGFAPYFYVPAPNGFTSNYLGEFKKELNSAVLKDMRSNKDNISVTV
LAVDITRKESMYGYHGQQTLDFLRITMAMPRLIAPAKRLLEQGFKFGPFSIQSYPSYEAN
IDFEIRFMVDSDVVGCCWIELPKGKYKVREETGAGDTDSQTPGKVSLSQYEVDVGWTDLI
SHPAEGDWQRIAPLRVLSFDIECAGRKGIFPEPDKDPVIQIASMVQCQGETEPFIRTVFT
LQSCTSIIGSQILCFTQEKQLLQSWAEFLRTVDPDIITGYNIQNFDFPYLLNRAAALKVN
YFPYLGRMRDIKSVLRESSFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGEDYTGATVIEPEKGYYSV
PITTLDFSSLYPSIMMAHNLCYTTLLQKGSAEKLGLSSDDFIRTPTSDQFVKSSVRKGLL
PEILENLLAARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIERTKQLVESKYTISNGYQADAKVIYGDTDSVMVKLGVPTVREAMATGK
EAAEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSSSADTHDKMDCKGIETVRRDN
CPLVANLINTCLQKVLIDRDPQGAVDHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG
KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGAAAYMKSEDPIYVLENNIPIDTQY
YLEQQLSKPLLRIFEPILGESKAESVLLKGDHTRCKTVLTSKIGGLMAFAQKRSTCIGCK
AVLKTDAAVCDFCKRKESELYQKEIFHLNTLEERFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLDDQSKLVSRFGW
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaaaggcgcaatggtggccctcacctgggtggtgcttctcaggccaagcgc
ggtaaaacagctggggaatgggaggacagtccatcacaatttgaagaggagttatcgatg
tttgatgactttgagatggatgcagaggagatggaggggcaggctggacatgatgtcatt
cccgtgggtgaccttttctcagcagaccttaaccctcgttggcgtcgacctcacgcccct
acactgaacccatcatcagatactttgatcttccagcagattgatctggactattatttg
ggagcttcggtggctggcatgcctggacagtcacaaggaaaagtaccaatcatcaggatg
tttggtgtaacagacagtggcaacagtgtgtgttgtcatgttcatggctttgcaccttat
ttctatgttcctgcaccaaatggattcacgtctaattacctgggtgaatttaaaaaagag
ttaaactctgctgttctgaaggacatgcgttcaaataaggacaacatctctgtcactgta
ctggctgtagacatcacccgcaaagagagtatgtacggttaccatgggcaacagactctg
gatttcttaaggataaccatggcgatgcctcgtctcatcgctcctgcaaagcgactgctt
gaacaaggctttaagttcggtccgttctccatccaaagttacccatcctatgaggccaac
atagattttgaaatcaggtttatggtggacagcgatgtagtgggatgctgttggattgaa
cttcctaaaggaaagtacaaagtgcgtgaggagacgggcgcaggggacacagattctcag
accccagggaaggtttctttgtctcagtatgaagtggatgttggatggacagacctgatt
agccaccctgcagagggcgactggcagaggatcgcaccacttcgagtcctcagctttgac
atagagtgtgcaggaagaaagggaatctttccagaaccagataaagaccctgtgattcag
atagcatcgatggtccagtgccagggcgagactgaacccttcattcgcacagtgttcacc
ctccagtcctgcaccagcatcattggctctcagatattatgctttactcaggagaaacag
ctacttcagagctgggcagagtttttgaggacggttgacccggacattattactggatac
aacatccagaactttgattttccctacttgctcaacagggcagctgctttaaaggtgaat
tactttccatacttgggtcgaatgcgggacatcaagtcagttctgcgagagtccagtttc
cagagtaaacaaatgggtcgcagggagaacaagaccatcaacatggagggcagagttcag
tttgatctgctgcaggtccttctaagggattacaaattgcgttcctacacactgaacgct
gtaagtttccattttctgcaagagcagaaggaggatgtgcaacattccatcattactgac
ctgcagaatggaaacgaacaaacgcggcggcgattggccgtctactgcctgaaagatgcc
tacctcccgctgcggctgctgcagaaactaatgtgtgtgatcaactacatggagatggcc
agagtgaccggagtgcctctcacctacttgctctcaagaggacagcagatcaaagttgtc
tctcagctgctgcgacaggcgatgaaacaggacctggtcatgcctgttgtaaagacagag
ggtggagaggactacaccggcgcaactgttattgaaccagagaaaggatattacagtgtt
ccaatcaccacgcttgacttctcctcactgtatccgtccatcatgatggcccacaatctg
tgctacaccacgctgctgcagaagggctctgcggagaaactgggactgtcgtcagacgac
tttatcaggactccgacctctgatcagtttgtaaagagttctgtgagaaaaggactcctt
ccagagattttggagaatctgctggctgcccgaaaaagggccaaagcagagctgaagaaa
gaaacggaccctttcaagaagcaagtactggacggccgacagctggcccttaaaatcagt
gcaaattctgtctacggcttcaccggggcccaggtgggcaaactgccctgcttggagatc
tcacagagtgtcaccgggtttgggagacagatgatcgagcgaaccaaacagttggttgag
tccaagtacacaatttccaatggctatcaagctgatgctaaagtcatttatggagacaca
gactccgtcatggtcaagcttggagttccaactgtgagggaggctatggctactgggaag
gaagcagctgagtgggtgtcatctcattttacaccccccatcaagctggagtttgagaag
gtgtattacccgtacctgctgattaataagaagcgctacgcagggctgtatttctcctca
agtgcagacacccacgacaagatggactgcaaaggcatcgagacggtccgcagagacaac
tgccctctggtggccaaccttatcaacacttgtctgcagaaagtcctcatcgacagggat
cctcagggtgcagtggatcatgccaaagaagtgatctcagacctgctctgcaatcgcatc
gacatcagccagctcgtgatcacaaaggagctgacacgcacagcccaggagtacgctggc
aagcaggcacatgtggagctggctgaaaggatgagaaaaagagacgcgggtagcgccccg
aacctgggagacagagtcccgtacgtcattatcaaggctgcaaagggagcagcagcttac
atgaagtcagaggatccgatctacgtgctggagaacaacattcccatcgacacccagtac
tacctggagcagcagctgtccaaacccctgctgagaatatttgagcccatcttgggggag
agcaaggcggagagcgtcctgctgaagggtgaccacacgcgctgtaaaaccgtgctgacc
tcaaagatcggaggcctcatggcgtttgcccagaagagaagcacctgcatcggctgcaaa
gctgtcctcaagactgatgcggctgtgtgtgatttctgcaagagaaaggagtcggagctg
tatcagaaagagatctttcatctgaatacgttggaggagcgattctctcgtctgtggact
cagtgtcagcgctgccagggctccctccacgaggatgtgctctgcaccagtcgtgactgt
cccatcttctacatgaggaagaaggttcagaaagatctggatgaccagagcaagctggtg
tctcgttttggatggtga
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