Octopus bimaculoides (California two-spot octopus): 106872308
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Entry
106872308 CDS
T04127
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106872308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obi03021
]
106872308
Enzymes [BR:
obi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106872308
Transcription machinery [BR:
obi03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
106872308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
TraF
Motif
Other DBs
NCBI-GeneID:
106872308
NCBI-ProteinID:
XP_014774734
EnsemblRapid:
LOC106872308
UniProt:
A0A0L8H7R1
LinkDB
All DBs
Position
14:54735959..54773698
Genome browser
AA seq
1688 aa
AA seq
DB search
MDYPEWDIPDSKTVNSLSFEMFSCEEIKKLSVKPITNSQTFDALLHPQPNGLHDLALGSL
NKYICFTCGQPPNTCTGHLGHIPLPLLLYNPMLYRTMFKILNMTCSSCNMLVLTKEALQI
VESKISLIKSGHLIAYHEINEKTNDPNRIEEIMNSLPQTDVAKDEETRHIRHLRHVWKQC
LALLRSTNRSKCPHCSATRPLLRQFRNCQIFATKMVSQTKTKMPRMKEEPNSRTAQPSML
DYTFKKSYLTPVEVQERMRKIWEQNGYILKMVYDFLDIDVEYPTDIFFLEVVPVIPSCFR
PCVVLKGNKYESVQTSSYKRIVQECEKIQQILHELRQMEGGQTEGESGQTGGESGQTEGG
SGQTEVDLTTVNDPKHKNLKKRLNESWLTLQKNVNWLYDDSSDPSSFRIRGVRQILEKKE
GLFRKHMMGKRVNYVARSVITPDPNIEVAEIGVPEIFAKTLTYPQPVTPWNVDKLRKMVI
NGPNEYPGAAYVVDQHGVKQRLLAENLTQRQSVANQLLTPSSVNKSLVTCKKVYRHLVDG
DYLLLNRQPSLHKPSIQAHRARVLPNIKTFRLHYANCKAYNADFDGDEMTAHVPQTELGR
AEAKEISSAQNQYVVPKDGSPLAGLIQDHVVAGVRLTIRGRFFRREEFNQLLFAALVNKP
DAIRLLPPAIIRPEKLWSGKQLISTLLINIIPKNKPLITMESTSKIPERLWNSKDHFVAS
ISRALSQEMGESSVIIRDSELLCGVLDKSQYGSTAYGLVHCCYEADQKRKNFIDYIKSYD
IDRSREELQVVVGESTKSVSEIVFGNNPMLIAELDKKVKKITNDVQNNLLRTIMPSGLLV
KFPDNNLQLMVNAGAKGSSVNAMQMSCLLGQIELEGRRPPMMPSGRFLPSFLQYDISPKA
GGFITGRFTTGISPQEYFVHCMAGREGLIDTAVKTSHSGYLQRCLVKHLESLIVNYDLTV
RDSDGSVIQFYYGEDSLDVTKTQFINENHFPMLIKNRASILNLQMPLKGADSNFSCRQIQ
NEIYKVRQQTDSLPKYSADRSAFLRFCKKKQEDLEVPDNISRMAGRSLKSTYLCSLWYNM
SEKRRQKFQKKVVSCPDPVLSKTWPYTQQGAISEEIYKMAKDFRSKSENSHRICPPGQAE
TKETLTEENFEKLINYKFIQCMVDPGEAVGLISSQSIGEPSTQMTLNTFHFAGLGEMNVT
LGIPRLREILFGAKHMKTPTMDIPVLDTDFARAEAKKLQMKLNPVALSQVLEKVDVTDRI
EMSSGFSDRLYIVRFQFLPPSKYQDQLATNPDDILRHMELKYITGLLKSIKSTIKLTQAS
LRILPKDIVHTIKATLEDSAEPSAKKEQDGESAGEEEEESAPNAERGDESEDSASGGEDE
IDAVDGNQKKQTSDEHDYNDDDDDDDDDDDDDDDDDKDNDEDSDSETEIKEDSNTTEIME
DEDEDVKKEEFLEEYFYLEDDMKKTKRMPAKGKYLDSFNEAILSYSYDEEKSLWCEVVFK
FNLRLTKVDLMTIIKNNAETSIIHRVPGIKRSILTRVKNELHLQTEGIHLSYIQQFPNIL
DINRIYCNSPTIMTQVYGIEAGLKVIIKEIQSVFGVYGIKVNYRHLSLVADYMAFEGQLA
FFTQKGMQACPSPLQSITFESAYRGITNAASQHLKDYLNSPTSQLVTGKLPSLGTGYFDI
LLPLIPVK
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atggattatccagaatgggatattcctgattctaagactgtcaacagcttatcttttgaa
atgttctcatgtgaagaaattaaaaaactcagtgtgaagcctataaccaactcacagaca
tttgatgcccttctccatcctcagccgaatggcttgcatgatctggcacttggttccctt
aacaagtacatctgttttacctgtggtcaaccacctaacacctgcacgggacatcttgga
catattcctttacctctcttgctttacaatcctatgctctaccggacaatgttcaagatt
ctgaacatgacatgctccagttgcaatatgctggttttgaccaaggaggccctgcaaata
gttgagagtaaaatttctctaattaaaagtggtcatttgattgcataccatgagattaat
gaaaagaccaatgatccgaatagaattgaagaaataatgaattcgttaccacagacagat
gtggcaaaagatgaggaaacaagacatattcgccacctgaggcatgtatggaaacaatgt
ttggctttactaaggagtacaaatcgaagtaagtgtccccattgctcggcaaccagacca
ttactgcgacagtttcgaaactgccaaatctttgcaacaaagatggtatcacaaacaaag
acaaagatgcccagaatgaaagaggagccaaatagtaggacggcacaaccaagtatgttg
gattacacattcaagaaatcgtacctaacccctgttgaagtccaggaacgtatgcgtaaa
atctgggaacaaaacggctacattctgaagatggtttatgactttttagacatcgatgtt
gaatatccaactgacatcttttttcttgaagtcgtacctgtgattccatcttgttttaga
ccatgtgttgttttaaaaggtaacaagtatgaaagcgtgcagacttcttcctacaaacga
atcgtgcaggaatgtgagaagatccaacaaattctccatgagctcagacagatggaaggt
ggccaaacagaaggagaaagtggccaaacaggaggggaaagtggccaaacagaaggagga
agtggccaaacagaagtggatctaactacagtcaatgacccaaagcataagaacctaaag
aaaaggctcaacgagagttggttgactctacagaagaatgttaattggttgtacgatgat
tcctctgatccgagttcattccgcatcagaggtgttagacagattctcgagaagaaagag
ggtctcttccggaagcacatgatggggaagcgtgttaactatgttgcccgatcagtaatt
acccctgaccccaatattgaagtcgctgagatcggagttcctgaaatctttgctaaaaca
ttgacctatccgcaacctgtgaccccttggaatgtggataaactgaggaaaatggtgatt
aatgggcccaatgagtatccaggagcggcatatgttgtcgaccagcatggtgtgaagcag
cgtcttcttgctgaaaatctcacccagcgccaatcagtagccaaccaactcctcactcca
tcgtctgtcaacaagtctttggtcacatgtaagaaggtttatcgccatcttgtggatggg
gactaccttctcctcaatcgacagccatctcttcacaagcccagtatacaagcccatcga
gctcgtgttttgcccaacatcaagactttccggttgcattatgccaactgcaaggcttac
aacgcagattttgatggtgatgaaatgacagctcacgtacctcaaactgaactaggtcgg
gctgaagctaaggaaatttctagtgcgcaaaaccagtacgtggttcctaaagatggaagt
cctctggcaggtctcatccaagatcatgttgttgctggagtgcgccttaccattcgtggt
cgtttctttagaagagaagagttcaatcaattgctgttcgcagcactcgttaacaaacct
gatgccattagactgttaccacctgctattattcgacctgaaaaactctggtctggaaaa
cagcttatatctactttactaatcaatataatcccaaagaacaagcctttaattacaatg
gaaagcacatcaaagattccagaaaggctttggaattcaaaagaccattttgttgcatca
ataagtagagctctttcacaagaaatgggggagagcagtgttataatccgagacagtgaa
ttgctgtgtggtgtcctggataaaagccagtacggatcaacggcatatggattagtacac
tgttgttatgaggctgatcagaaacgcaagaattttattgattatatcaaaagctatgat
atcgacagatcaagagaagaactgcaagtggtggttggtgaaagtaccaagtctgtttct
gaaattgtctttggaaacaatccaatgcttattgcagaattggacaagaaagtgaagaaa
atcaccaacgatgtacagaacaacttgttacgaaccattatgccatctggtctgcttgtc
aagttccctgacaataatcttcagttgatggtcaatgccggtgccaaaggatcttcggtg
aacgctatgcaaatgtcctgtcttctgggccaaattgaattggaaggacgaagaccacca
atgatgccaagtggccgtttcttgccatcatttctacagtatgacatttctcccaaggct
ggtggcttcattactggccgtttcacgacaggaatttcacctcaggaatactttgtccat
tgtatggccggcagagagggtctcattgataccgctgtaaaaaccagtcattcgggatac
cttcaacgttgcttagttaagcatttagagagcctcatcgttaattatgacctcacagtc
agagacagtgacggcagtgttattcagttttattatggtgaagacagcctggatgtaacc
aagactcagtttattaacgagaatcacttcccgatgctgatcaagaatcgtgcttccatc
ttaaacctacagatgcctcttaaaggagctgacagcaacttcagctgccgtcagatacaa
aacgaaatttataaagtcaggcaacagactgactccctcccaaagtattcggctgacaga
agtgcattcttgagattctgcaagaaaaaacaggaagaccttgaagtgccagataacatt
tctcgtatggcaggacgttctttgaaaagcacctacctgtgcagtctgtggtacaacatg
agtgagaaacgacgccaaaagtttcagaagaaggttgtgtcctgtccagatcctgttttg
tctaagacttggccttatactcagcaaggtgccatctctgaagaaatatacaaaatggca
aaggatttccgttccaaatctgaaaattcacataggatatgcccaccaggacaagctgag
actaaagagactcttacggaagaaaactttgagaaactgataaattacaaatttatacaa
tgtatggtggaccctggagaagctgttggcttgatttcatctcagtcaattggtgagcca
tcaactcagatgacactgaacacattccactttgctggtcttggagagatgaacgtcact
ctgggtatccctcgtctccgtgagattctctttggtgccaagcatatgaagactcctaca
atggacattcctgtcttagacacagacttcgccagggctgaagccaaaaagctgcagatg
aagttaaatcctgttgcgctcagccaggtgttagaaaaggtagatgttacagatcggatt
gagatgtcatctggctttagcgatcggttgtacatagtccgtttccagttcctgccccca
agcaaataccaagaccagttggcaacaaatccagacgatatccttcgccacatggaattg
aaatacatcactggtttgctgaaatccatcaagtcaacaatcaagttgacacaggcttcg
ttacggattcttcccaaggatattgttcataccataaaagctacgctagaggattcggct
gaaccatccgctaagaaggagcaagatggagaaagtgctggggaggaggaagaggagtct
gctcccaatgccgagaggggagacgagtctgaagactccgcatccggtggagaagacgag
atagatgcagttgatggcaaccagaagaagcagacaagtgatgaacatgactacaatgat
gatgatgatgatgatgatgatgacgatgatgacgacgacgacgacgataaagacaatgat
gaggacagtgacagtgaaacggaaataaaggaggacagtaatacgaccgaaattatggaa
gatgaggacgaagatgtcaagaaagaagagtttttggaagaatatttttaccttgaagat
gacatgaagaaaacgaaaagaatgccagcaaaagggaaatacctagactccttcaatgaa
gctatattgtcatatagttacgatgaagaaaagagcctttggtgtgaagtagtattcaag
tttaatttaagattaaccaaggttgatctgatgaccatcatcaaaaacaatgctgagaca
tccattatacacagagtgcctggaatcaaacgttccatcttaacaagggtcaagaatgaa
ctccatctgcagacagaaggaattcacctcagctacattcaacagtttcctaatattctt
gacattaatcgtatctactgtaacagtccaacaatcatgacacaggtctatgggatagaa
gctgggttaaaggttatcatcaaggaaattcaatctgtctttggagtttatggcatcaaa
gtgaattaccgacatttgtctcttgtcgcagactacatggcatttgaaggccaattggct
tttttcactcaaaaaggcatgcaagcatgtccgtccccgttacaatcaatcacttttgag
tcagcttaccgaggaataacaaatgctgcatctcagcatttgaaagactatttaaattct
cctacctctcagttagttacaggtaaactgccgtcattaggcactggatactttgacata
cttttacctctgatacctgttaaataa
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integrated database retrieval system
