Octopus bimaculoides (California two-spot octopus): 106872450
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Entry
106872450 CDS
T04127
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106872450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106872450
Enzymes [BR:
obi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
106872450
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106872450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_24
CbiA
AAA_14
AAA_22
AAA_16
TniB
Motif
Other DBs
NCBI-GeneID:
106872450
NCBI-ProteinID:
XP_014774939
EnsemblRapid:
LOC106872450
UniProt:
A0A0L8H6R6
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All DBs
Position
9:complement(88793430..88822505)
Genome browser
AA seq
428 aa
AA seq
DB search
MEGSSSENKEETTHTEEYKLEPLSELRVEVDSGAEVELELTDGKAEVFGTELVKGKRATF
LPSSKLAVFTWHGCSIKLIGKTEMAYVSKETPMVMYLNVHGALEQMKRKASEELTPGPRI
MIVGPKDVGKSTVCKLFLNYCVRAGHAPLFVDIDVGQSMISIPGTLAAAVVERPADIEDG
FIQSVAPVVYHFGHFSPNENLALYNLLISRLASVIQLKCEANKKTNLSGVIINTSGWVRG
GGYQSLVHTAGAFEVDIIAVLDQERLYNELVRDMPDFVKVILLPKSGGVVERNAHSRTES
RDSKIREYFYGIRNTYFPHSFEVKFTDVKIYKIGGPHLPDSCLPLGMKSQDSKTKLVPVQ
PGVNLMHHVLSMSAATTLEKLVEVNVLGFVVVTSVDAERQVFTVLAPAPRPLPKTYLLQM
DIQFLDIK
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggagggaagttcaagtgaaaataaagaagagactacacacacagaagagtacaagctt
gaacctttatctgaacttcgagttgaggtggacagtggagcagaagtagagttagagctg
acagatgggaaagcagaggtgtttggtacagaactggtgaaggggaagagggccactttc
ctgccaagttcaaagttagctgtcttcacatggcatggatgcagcatcaaactaattggt
aagactgaaatggcttatgtctcaaaggaaactccaatggtgatgtacttgaatgtccat
ggagcattggaacagatgaaacggaaggccagtgaagagctgactcctggacccaggatc
atgattgttggacctaaggatgttggtaaaagcaccgtttgtaagctgttcctgaattat
tgtgtacgagctggccatgccccattatttgtggatattgatgttggacaaagtatgatt
tcaatccctggtaccctggcggcagcagttgtagaaagacctgcagatattgaagatggc
ttcatccagtccgtggcacctgttgtctaccattttggccattttagtcccaatgaaaac
cttgctctgtacaacctcctcatcagtagactagcatcagtaatccagttgaaatgtgag
gcaaataagaaaactaacctcagtggcgtcatcatcaacacaagtggctgggtacgaggt
ggaggttatcaatcgctagtacatacagctggagcatttgaagtggacatcatagcagtg
ttagaccaagagagattgtacaatgaattggtgcgagatatgccagacttcgtgaaagtt
atcctgctgccaaaatctggaggggtcgttgagagaaacgcccacagcagaacagaaagc
cgtgacagcaaaatcagggaatatttctatggaatcagaaacacatactttcctcattcg
tttgaggtgaagttcactgatgtcaaaatttacaaaatagggggtccacatttacctgat
tcttgtttaccattgggaatgaaatcacaagacagtaagacaaaacttgttccagttcaa
ccaggtgtgaacttaatgcatcatgtgttaagtatgagtgcagccacaactttagaaaaa
ctagtcgaagtgaatgtgctgggatttgtagttgtaaccagtgttgatgccgagcgtcaa
gtgtttacagtgctggcaccagctcctcgaccactgcccaaaacttacttactacagatg
gacatacaattccttgatataaaataa
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