Ooceraea biroi (clonal raider ant): 105280257
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Entry
105280257 CDS
T05778
Symbol
DNAlig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03030
DNA replication
obo03410
Base excision repair
obo03420
Nucleotide excision repair
obo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105280257 (DNAlig1)
03410 Base excision repair
105280257 (DNAlig1)
03420 Nucleotide excision repair
105280257 (DNAlig1)
03430 Mismatch repair
105280257 (DNAlig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
obo03032
]
105280257 (DNAlig1)
03400 DNA repair and recombination proteins [BR:
obo03400
]
105280257 (DNAlig1)
Enzymes [BR:
obo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105280257 (DNAlig1)
6.5.1.6 DNA ligase (ATP or NAD+)
105280257 (DNAlig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
105280257 (DNAlig1)
DNA replication proteins [BR:
obo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
105280257 (DNAlig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
105280257 (DNAlig1)
DNA repair and recombination proteins [BR:
obo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
105280257 (DNAlig1)
NER (nucleotide excision repair)
Other NER factors
105280257 (DNAlig1)
MMR (mismatch excision repair)
Other MMR factors
105280257 (DNAlig1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Pro_3_hydrox_C
Motif
Other DBs
NCBI-GeneID:
105280257
NCBI-ProteinID:
XP_011338912
LinkDB
All DBs
Position
1:complement(1651252..1656305)
Genome browser
AA seq
974 aa
AA seq
DB search
MYIVLNDVADVLCLCSSFFTKLPSKKENSTESKSESSLALPARRLEYAAVTRSRFLVIFN
GIHTTNSNNSSNKQEAHHDAQGNGKRKRDSSSELASSPLSKKLDTKSTKAKRISKTPSPA
AKPRVKLGATPKSKSNKLSPGASKKTEKKKEKTSVTVNKKREEKKEKDEANEAKSVKDNE
KEEKNSTDSKVNLERKSVSKTVKKKRARIIEPVESSDDEDHLPLPESPERKNSPKKPEPN
GKEIKIVEESSKVDKNTLDNEANKSASDNEEKSKSPKKESMPEKKPPKKVHSFLLSKQKS
DTKDDKRNGGKTRKSADQSYNPSASGYHPINDACWKRGDKTPYSAFTRTLELIEETSARL
KIIEILSNYFRSVIVLSPADLLPSVYLCLNQLAPAYEGIELGVADTNLMKAIAQCTGRTL
AQIKADVQEVGDLGIVAEGSRSNQRTMFQPAPLTVPNVYTKLKEIAQMTGHASLAKKLDK
IQTLFVACRNTEARYLIRSLAGKLRIGLAEQSVLQALALACAMTPPEQEYPSEILNASKT
MSSDRFKEKYDQIAITLKTTYCECPNYNLIIPVLLEAGINALPTKCKLTPGIPLKPMLAH
PTKGVQEVLTRFDGLKFTCEWKYDGERAQIHVADNGQVSIYSRNQENNTSKYPDIIKRFK
NTCGDLVKNCVLDCEAVAWDNGKKQILPFQILSTRKRKDANEEDIKVQVCVFMFDLLYLN
GESLVKQPFAKRRELLREHFKEVEGEWKLANSMDTTTMEEVQIFLDESVKGNCEGLMVKT
LEEEATYEIAKRSRNWLKLKKDYLDGVGDTLDVVVIGGYIGKGKRTGTYGGFLLACYDQE
NEEYQSICKIGTGFKEEDLENHTKFFKDHVISQAKSYYRFDSSHEPDHWFESIQVWEIKC
ADLSLSPVHRAAIGVVDPEKGISLRFPRFIRIREDKNCEEATSAQQVADMYNNQEQIKNQ
KNQSASKTAEEDFY
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgtacatcgttttgaatgacgtcgccgatgtactttgtctttgcagctcctttttcacc
aagttaccgtccaagaaggaaaattcgaccgaaagtaaatcggagagttcactggctcta
ccggcccgacgtctggagtacgcggctgtgactcgtagtcgatttcttgtcatttttaat
gggatacatacaaccaacagcaacaactcatccaacaaacaggaggcccaccatgatgct
cagggaaacggcaaacgaaagagagacagcagcagtgagctcgctagttctcctctctcg
aaaaagctagatactaagtctacaaaggccaagagaatttccaaaactccttctccagct
gcaaagcctcgtgtaaagttaggagctacgccaaaaagtaagtcaaataaactttcacct
ggagcatcgaaaaagacagagaagaagaaagagaaaactagtgtaactgtaaacaaaaaa
agagaagagaaaaaagaaaaagatgaagcaaatgaagctaagtctgtaaaagataacgaa
aaggaagagaaaaattcgactgattcaaaagtcaatttggaaagaaaatctgtaagtaaa
actgtaaagaagaaacgagccagaataattgagccagtagagtcgagcgacgatgaggat
cacttacctttgcctgaaagtcctgaaagaaaaaatagtccaaaaaagccagagcctaat
ggcaaagaaataaaaatcgtagaagagtctagcaaagtcgacaagaacactttggataat
gaagcaaacaaaagtgcttcggataatgaggaaaaaagcaaaagtccaaagaaggaatct
atgcctgaaaagaagccgcccaagaaagtgcatagctttttactatcgaagcaaaagagc
gatacaaaggatgacaaaaggaacggcggaaaaactagaaaaagtgctgaccaatcttac
aatcccagtgcatctggttatcatccaataaacgacgcgtgttggaaacgaggagataaa
actccatatagcgcattcacgcgtactttggagctcattgaggaaactagtgcgagactg
aagataatagagatactgtcgaattacttccgatctgtcatagttctgagcccagcggat
ctgttgccgagcgtgtatttgtgccttaatcaactagctccagcgtatgaaggaattgag
ctcggtgtggccgacacaaatttgatgaaggcgatagcacaatgtaccggcagaacgttg
gcacaaatcaaagctgacgtccaggaggtcggtgatttgggaatcgtggcagaaggtagc
agatccaatcagagaaccatgttccaaccagcaccactgaccgttcctaatgtgtacaca
aaattgaaggagatcgcacaaatgacggggcatgcgtctctcgcgaagaagttggataaa
attcagacgctgtttgtagcgtgtcgtaatactgaagcgaggtatctcatcagatcgttg
gccggaaaacttcgcatcggattggcagagcaatccgtcttgcaagcactggctctagct
tgtgcgatgacgccaccggaacaagaatatccatcagaaattctaaatgcaagcaaaacg
atgtcaagtgatcgtttcaaagaaaaatacgatcagatagctattacattaaagacaacg
tattgcgagtgtccgaattacaaccttataattcccgtcttactagaggctggcattaat
gccttgccgaccaaatgcaaacttactcctggaatacctttgaaacccatgttggcgcat
cctactaagggtgttcaagaagtcctcacacggttcgatggcttgaagttcacgtgtgag
tggaaatacgacggggaaagagcacagatacacgttgcggacaatggtcaagtcagcatc
tacagtagaaatcaagagaacaataccagcaagtatccggatattattaaacgattcaag
aatacttgtggtgacttggtgaaaaactgtgtactcgattgcgaggcggtcgcctgggac
aacggaaagaagcaaattctaccgttccaaattctcagtacgagaaagcgaaaggatgcc
aacgaagaggacatcaaagtgcaagtgtgcgtgttcatgttcgatctgttgtatctgaac
ggcgagtcgttggtgaagcagccgttcgcaaaacgccgcgagttattgcgagagcatttc
aaggaggtagaaggcgaatggaaattggctaatagcatggacactacaacaatggaggag
gtgcaaatattcttggacgagtccgtgaagggaaattgcgagggtttgatggtgaagaca
ttggaggaagaagcaacttacgagatcgcgaagcgatcgcgcaattggctgaagctaaag
aaggattacttggacggtgtcggcgatacgctcgatgtcgttgtaattggtggttatatc
ggcaagggaaagagaactggcacctacggtggcttcctcttggcgtgttacgatcaggag
aacgaggagtatcaaagtatttgtaagatcggtacgggtttcaaagaggaagacctcgaa
aatcacacaaagttcttcaaagatcacgtgatatcccaagcaaaatcatactatcgcttc
gacagtagccatgagccagatcattggttcgagtcgattcaagtctgggagatcaagtgc
gccgatctctccctctcgcctgttcatagggcggctattggagtagtcgatccggaaaag
ggaatatctttgagatttccacgatttattagaatccgcgaggacaagaattgcgaggag
gcaacgtccgctcaacaagtcgcggacatgtataataatcaagaacagataaaaaatcag
aaaaatcagtcagcatcgaagaccgcggaggaagatttctattaa
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