Oryctolagus cuniculus (rabbit): 100340054
Help
Entry
100340054 CDS
T03373
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100340054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocu03021
]
100340054
Enzymes [BR:
ocu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100340054
Transcription machinery [BR:
ocu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100340054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
HMG_box
Motif
Other DBs
NCBI-GeneID:
100340054
NCBI-ProteinID:
XP_002709703
Ensembl:
ENSOCUG00000010138
UniProt:
A0A5F9CTH9
LinkDB
All DBs
Position
2:100627006..100707384
Genome browser
AA seq
1713 aa
AA seq
DB search
MLGSKNVPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSANGLYDLALGPADS
KEVCATCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
FCQLRVLEVGALQAVFELERILNRFLEENADPSAFEIQEELEKYTAEIVQNNLLGSQGAH
VKNVCESRSKLIAYFWKTHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAIVHKKAGQQDS
ESLGIEESQMGKRGYLTPNSAREHLFAIWKNEGFFLNYLFSGLDDVGTESGFNPAVFFLD
FMVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPCEVALPVT
EEDKDTSVAVDRSFLSALPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPNVHPGASMVINEDGSRTALSATDVTQREAVAKQLLTPATGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEACVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG
LTDKVGRVKLLPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKISGKAWVKET
PRPVPNFDPNSMCESQVIIKEGELLCGVLDKAHYGSSAFGLVHCCYEIYGGETSGKVLTC
LARLFTAYLQLYRGFTLGVEDILVKPKADVRRHRIIEESTQCGSRAVRAALNLPEAASCD
EIREKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK
PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNYEVITKSKHLHEVLAKADPKKALRHFRAIKKWQSKHS
GPLLRTGAFLRYSQKIQAAVKAQNLEGKNQNGRSPETQQMLQMWYELDEQSRRKYQKKAA
PCPDPSLSVWRPDIYLGSVSETFEKKVDDYSQEWAAQAETSYEKSELSLDRLRTLLQLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKVDVQESFCMGEKQNKFRVYEVRFQ
FLPHAYYQQEKCLRPDDILHFMETRFFKLLMESIKKKNSKASAFRSVNTRRATQRDLDDS
EESGRNRGEQEGDEEEDGHIVDAEAEEGDADASDAKRRKKQEEEVDYESEEEEEKEAEEN
EDEDAQEEGNFQSEGAHKAQEPDNDEVGSGAEDDSPQKTPHSQEPRGAESVERRVQAVRE
AHAFVEDYQYDTEESLWCQVTLKLPLMKINFDMSSLVVSLAHSAVVYTTKGITRCLLNET
TNRKNEKELVLSTEGINLPELFKYAEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKD
VFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMM
GSHDELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgttaggctccaagaacgtgccctggcgccggctacagggcatttccttcgggatgtat
tcggctgaagagctcaagaaattaagtgtgaaatctattacaaatcctcgctatgtggac
agcctggggaacccctcggccaatggcctgtacgatttagccttgggccctgcagattcc
aaagaagtatgtgccacttgcgtgcaggacttcaacaactgctccgggcacctgggccac
attgagctgcccctcactgtgtacaacccgctcctcttcgacaaactctacctgctgctc
cggggctcttgtttaaactgccacatgctgacttgtccccgggccgtgatccacctcttg
ttctgccagctgagggttctggaagtcggggccctgcaagccgtcttcgagctcgagcgg
attctgaacaggtttctggaagaaaatgctgatccttctgccttcgaaattcaggaagag
ttagaaaagtacacagccgaaatagtacagaacaacctgctggggtcccagggtgcgcat
gtgaaaaatgtgtgtgagagccggagcaaactcattgcttatttctggaagacacatatg
actgccaagcgatgtccccattgcaagactgggcggtcagttgtccgaaaggagcacaac
agcaagttgacgatcacgtatcctgccattgtgcacaagaaagctgggcaacaggactcg
gagtcgctgggaattgaggaatcacagatgggaaaacgagggtacctaacaccaaacagt
gcgcgagaacatctttttgccatttggaagaatgaaggattctttctgaattacctcttt
tctggactggatgatgttggcacggagtccggattcaaccccgctgtgttcttcctggat
ttcatggttgtaccaccttcaaggtatcgccctgtcaatcgcctgggggaccagatgttt
accaatggccagacagtgaatctgcaggctgtcatgaaggatgtagttctgatccgaaag
cttctggcactgatggcgcaggagcagaagctgccatgtgaggtggcactacccgtcaca
gaagaggataaagatacttcagttgctgtggatcgatcctttttaagcgcacttccgggc
cagtccctcacagacaaactttacaacatttggattcgccttcagagccacgtcaatatc
gtgtttgacagtgagatggataaattaatgatggaaaagtaccccggcattagacagatt
ctggagaagaaggaaggcctgttccgcaagcacatgatgggaaagcgagtggactacgcg
gctcgttcagtcatctgcccagacatgtacatcaacaccaacgaaatcggaattcccatg
gtgtttgccacaaaactgacctaccctcagccggtgactccctggaacgtgcaggaattg
aggcaagcagtcatcaatggccccaacgtgcacccaggggcctccatggtcatcaacgag
gatggcagtcgcacagccctaagtgcgacggacgtgacccagcgagaggctgtggccaag
cagctcctgacaccagctacaggggcacccaagccccaggggacaaaaatcgtgtgccgg
cacgtgaagaatggggacattctcctactgaatcggcagcccaccttgcacagaccctcc
atccaggcccaccgcgcccgcatcctgcctgaagagaaagtcctacggctccactatgcc
aactgtaaggcctacaatgctgactttgatggagacgagatgaatgcccacttcccccag
agtgagctgggccgggccgaggcctgcgtcctggcctgcactgatcagcagtaccttgtt
cccaaggatggccagccattggcaggactgatccaggatcacatggtttcaggtgcaaac
atgacgattcggggttgttttttcacccgggaacaatatatggagctggtgtaccgagga
ctcacagacaaagtggggcgtgtgaagctcttgcctccagccattctgaaaccctttcca
ctgtggacaggaaagcaggttgtttcgacgctgctcataaatataatcccagaggaccac
atcccactgaacttatctgggaaggcaaagatcagcgggaaagcctgggttaaggaaact
cctcgacctgttcccaattttgaccccaactcgatgtgtgagtcccaggtgatcatcaag
gaaggggagctgctctgcggagtgctggacaaggcacactacgggagctctgccttcggc
ctggtgcactgctgctatgagatctacgggggcgagaccagcggcaaggtcctcacctgc
ctggctcgcctctttaccgcctacctgcagctctacaggggcttcaccttgggtgtggaa
gatattttggttaagccgaaggcagacgtcaggagacacaggatcattgaagaatccacc
cagtgtgggtcccgggccgtcagggctgcactcaacctgccagaagccgcgtcgtgcgat
gagatccgagagaaatggcaggatgcccatctgggcaaggaccagagggactttaacatg
attgatctgaagttcaaggaggaagtgaaccattacagcaatgagattaacaaggcatgc
atgccttttggcctgcacagacagttccccgagaacaacttgcagatgatggtgcaatcg
ggagccaaagggtcgactgtgaacacgatgcagatctcatgcctgctgggccagatcgaa
ttggaaggtcggagacctccgctgatggcatctggcaagtcactgccctgcttcgagcct
tacgagttcacccccagagctggcggctttgtcaccgggagattcctcactggcatcaag
cctcccgagttcttctttcactgcatggcggggcgagagggcctggtcgacaccgctgtg
aaaaccagccgctccggctatctccaaaggtgcatcatcaagcacctggaagggctggtc
gtccagtatgacctgacggtgcgcgacagcgacggcagcgtggtgcagttcctgtacggg
gaggacggcctggacatccccaagacgcagttcctgcagcccaagcagttccccttcctg
gccagcaactatgaggtcataacgaaatcgaagcatctccatgaagttttagccaaagca
gatcctaagaaagctctgcgccacttccgagccatcaaaaaatggcaaagcaagcattcc
ggccccctgctgaggaccggtgccttcctgcgctactctcagaaaatccaggcggccgtg
aaagcccagaacctcgagggcaagaaccagaacggccgcagcccggagactcagcagatg
ttgcagatgtggtatgagttggatgagcagagccgaaggaaataccagaagaaagcagcc
ccttgtcctgaccccagcctgtcagtctggcgcccagacatctacttggggtctgtgtcc
gaaacatttgaaaaaaaggttgatgactacagtcaggagtgggcagctcaagcagagaca
agttatgagaaatcggagctttctctggacaggttgaggaccctgctgcagctgaagtgg
cagcgctccctgtgcgacccgggcgaggccgtgggcctgctggctgcccagagcatcgga
gagccctccacacagatgaccctgaacactttccactttgctggcagaggcgagatgaac
gtcacgctgggcattccaaggctgagggagattcttatggtggccagcgccaacatcaag
acgcccatgatgagcgtgccggtgctcaacaccaagaaagccctgaagagagtgaaaagc
ctgaagaagcagctcaccagggtgtgcttaggggaggtattgcaaaaagttgacgtccag
gagtccttctgtatgggagaaaaacagaacaaattccgggtgtacgaggtgcggtttcag
ttcctgccacacgcttattaccagcaggagaagtgcctgcgacctgacgacatcctgcac
ttcatggaaacaaggttctttaaacttctgatggaatccatcaaaaagaagaatagcaaa
gcctcagctttcagaagcgtgaacactcggagagcgacacagcgggatctagatgactct
gaggagtcggggaggaatcggggagagcaggaaggtgatgaggaagaggacgggcacatc
gtggatgctgaagctgaggagggggacgcggacgcgtctgacgccaaacgcaggaagaag
caggaggaggaggtcgattatgagagtgaagaagaggaggagaaggaggcagaagagaat
gaagacgaggatgcgcaggaggaagggaatttccagagtgaaggcgcccacaaggcacag
gagccagacaacgatgaggtgggctccggtgctgaggacgactcgccccagaaaaccccc
cacagccaggagccccggggagccgagtccgtggagcgccgggtgcaggccgtgcgagag
gcccacgcgttcgtagaggactaccagtacgacaccgaggagagcctgtggtgccaggtg
accctgaagcttcctctgatgaagattaactttgacatgagctccctggtggtgtccttg
gcccacagcgccgtggtctacacaaccaagggcatcactcggtgcctcctgaacgaaacg
accaacaggaagaatgagaaggagctcgtgctaagcacagaagggatcaacctgccagag
ctgttcaagtacgcagagattctggatctgcgccgcctctattccaatgacatccatgcc
atggccaacacgtacggcatcgaggccgcgctccgtgtgatcgagaaggagatcaaggac
gtgtttgccgtgtacggcattgcggtcgaccctcgccacctctccctggtggccgactac
atgtgcttcgagggtgtgtacaagcccctgaatcgcttcgggatccggtcaaactcctct
cctctgcagcagatgactttcgagacaagcttccagtttctgaagcaggccaccatgatg
ggatcccatgacgagctgaggtccccttcagcctgccttgtggtcgggaaggtcgtcaag
ggcggcacgggcctattcgaactcaagcagcccctgagatag
DBGET
integrated database retrieval system
