KEGG   Ostrea edulis (European flat oyster): 125652141
Entry
125652141         CDS       T09123                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
oed  Ostrea edulis (European flat oyster)
Pathway
oed03020  RNA polymerase
oed03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:oed00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    125652141
  09124 Replication and repair
   03420 Nucleotide excision repair
    125652141
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oed03021]
    125652141
   03400 DNA repair and recombination proteins [BR:oed03400]
    125652141
Transcription machinery [BR:oed03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     125652141
DNA repair and recombination proteins [BR:oed03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      125652141
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C Zn_ribbon_recom Ogr_Delta CpXC DZR
Other DBs
NCBI-GeneID: 125652141
NCBI-ProteinID: XP_048737084
LinkDB
Position
5:81040924..81049467
AA seq 127 aa
MDLYENHDDGPGFVGIKFCKECNNMLYPKEDKENRILLYACRNCDYQEEATNPCIYVNKI
THEVDELTQIIGDVIADPTLPRTEDHPCPKCSHKESVFFQSHSTKAEEGMRLYYVCTNSQ
CIHRWTE
NT seq 384 nt   +upstreamnt  +downstreamnt
atggatttatatgaaaatcatgacgatggccctggtttcgttggaatcaaattttgtaaa
gaatgtaacaatatgttgtatccaaaggaagataaagaaaacaggatattgttgtatgct
tgtagaaattgtgattaccaagaagaagccaccaacccatgtatctacgtcaacaaaatc
actcatgaagtcgatgagctaacccaaatcattggagacgtaatagcagacccaaccttg
ccccgcactgaggaccacccttgtcccaaatgttcccacaaagagtccgttttctttcag
tctcacagtaccaaagccgaggaagggatgcggctctactacgtctgcaccaattcacaa
tgtattcatcgatggacggagtag

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