Ostrea edulis (European flat oyster): 125660169
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Entry
125660169 CDS
T09123
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03020
RNA polymerase
oed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125660169
09124 Replication and repair
03420 Nucleotide excision repair
125660169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oed03021
]
125660169
03400 DNA repair and recombination proteins [BR:
oed03400
]
125660169
Enzymes [BR:
oed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125660169
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125660169
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125660169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EutB
Rad50_zn_hook
UBZ_FAAP20
AcetDehyd-dimer
zf-C2HC_2
Motif
Other DBs
NCBI-GeneID:
125660169
NCBI-ProteinID:
XP_056004172
LinkDB
All DBs
Position
9:6276484..6341628
Genome browser
AA seq
3025 aa
AA seq
DB search
MAYTADSNAPLRDVKRVQFGILSPDEIRRMSVTDGGIKYSEVTEGGRPKLGGLMDPRQGT
IDRSARCQTCAGNISECPGHFGHIELAKPVFHIGFLVKTIKVLRCVCFFCSKLLVDPTHP
KMKEILSKSRAYPRKRLVAVYDLCKSRKVCEGGDEMDSKLGDDNQDGDQKKGHGGCGRYQ
PKIKRNGLELIAEWKDTNEDSQEKKIILTADRVHEIFKRISDEECQVLGMDPKFSRPDWM
IVTVMPVPPLAVRPAVVMFGSARNQDDLTHKLADIIKANNQLRRNEQNGAASHIISEDMK
MLQYHVATFTDNELPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNMTFPDLVTPFNIDRMQELVRRGANQYPGAKYIIRDNGERID
LRFHPKASDLHLQIGYKVERHMQDNDYVVFNRQPTLHKMSMMCHKVKVLPWSTFRLNLSV
TTPYNADFDGDEMNLHLPQSLETKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRKM
TKRDVFLDRGQVMNLLMFLPRWDGHVPQPAILKPKPLWTGKQLFSLVIPGRTNCIRTHST
HPDEEDKGPYKWISPGDTKVLIEDGMLISGILCKKTLGTSSGSLAHVVFMEYGFEVAGLM
YGHIQSLVNNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKHDVIEVIEKAHNDDLEPT
PGNTLRQTFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACV
GQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDAVHVEFQTMPT
LKPSNRAFERQFKFDATNERYMKKCLSEEVIKDLMGDAHSVSQLEKEWDQLKEDRDILRS
IFPTGDSKVVLPCNLQRMIWNAQKIFRIDVHKPTDLHPIKVVEGVDELCKRLNVVVGEDR
LSVQANANATLLIKCLVRSTLCAKRVTEEFRLSSEAFEWLIGEIESRFQQAQVHPGEMVG
ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLIGQAA
RDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEWVNVYYEMPDFDVSKIS
AWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDESK
MQNEEDIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKKRIFITEEGEF
KAVAEWILETDGTALMKVLSQRDVDPIRSTTNDIVEVFSILGIEAVRKSIEKEMNHVISF
DGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAASHGEM
DPMKGVSECIMVGQLSRIGTGSFDLLLDAEKCKYGMEIPTNIGAGMPGGIGTGLFFGAGS
SPTAGMSPQMTPWQQGATPAYASAWSPGVGSGMTPGAAGFSPSAASESGYSPGYSPAWSP
QPGSPGPASPYIPSPGGAMSPSYSPASPSYVPSSPAATPQSPGYSPTITVLLLQAILQPL
PVTLPQVQVTLRPLPVILRLVLRTVLQVLLTAQAPQVILLQAPVTAQQAQVTLPAVQSTV
LQVHLTPPQAPRIPPAPHNTPPHLPNILLPAPPIPPAVLSTPPTLPLTPLPLPTIAPLLP
STAQVLRDTVQVQSIPPRRLPIHLPALDILRLAHLIPPQARSIPLLAQPTPHHHLSTHLP
VHGTHQTHLDLNEKQEGRNSNFXEFYCRTMARYDSDDDRKKRKKKKKKHSRSRSRSRSRR
RDRSPKSRTTEDPFTNVPGFADMTPSEQAQVRMQMALKAAAAADEKIKEQTTSSSESKSH
KEQLQFSNAIKDIESSSFVQSTFFSNRSDKDKTSSKKEEEFFFGTAAEFKPDMAVKKILE
VDDLSKLAHSNLFVDPEVKMDQWIERLKSLRQRKLEGEVIMQVIEDMEGRLRNCERTHGP
ETLKTVQHNTEDPFSYSSLNKNYRIPKMTTEERDHKQMLKDSGIDTKGMTKDEILQIVEV
LELSKQDVSENAYHSQSDQSEPTSPKTIQSKSASQEFSTPNRGTQGSSQSHAATVTESTT
GDRDSRQQSNHGGNNKPVSRTSFRLSETPEEEDGEDVSVVNKRQANRKVTAAVEGSTKTS
ETTSGPELHEGMIDKVVRTCRKASASVFRNFTAKRKTTRSPVIIADSSDNEEQSEDDFET
KVRKNSHKRMILESSDEDTQEFVPAKQKNVAVSKRMKLMSSDTETVKDSQEEDNQRSLSP
TAIELENFKQDLEDKNTYRSLGRHYRKVRRRSGRNKNLTPLYAPDLKKVENWTRVILQVF
EIYHRKLFHLQSKSQTYLEQGEPVKAGRHAEKTIDVKRRGQQEAEMFNSVEEEDVEFATV
NNANGQFCLNENSTDLTTNPANKDGRTGAGKQTRPLKLTKPRRKANKDKDEEKNVFDFVE
NDDGLVEVVDKGSQVAYSPAEKEDVELSEYFMGGNKENHGGGVQGEKIVKDRHTPDILMG
EDADIFPKSVRKPAPKRIGKVSQGSGKPEKQLQFDVKALRSRVTKSENNESGTLDSNESK
LNEKLSKTRLKRYHSDISTASSDSTSRMEEDFIQELAKKDKLMKAGTLHPTKSPEIMINP
EGDVYATQVCAMEEKHSNNFEGNEEIMDTQVTENYFNVGDNDGKINLSPLVSGKTMWRDN
SKCVDETENKFDDSSKVNSVDEIIADDSDEEVIFNVKSPGEENVQKKKKSRDQDGEVRLN
IKRRYGPSKVRKFQIPDPEEDREAQTSSEVKVRAEGDVNESDDEWLPVSHWTKDKRTTKT
YAKRTKTNENSCKPPPKISEKVSCPMCYRKFDSDHIETHAAQCEGEINDGAHESMDTETN
RNQGNSSTSEKMDVCIVCEKPLPHGYQDYAHPQCLKEATQAQHMVDNKSFPSMQAEEPRT
TRSRGRSQQSKSANQSSDQSNIFEG
NT seq
9078 nt
NT seq
+upstream
nt +downstream
nt
atggcatacaccgccgattcaaatgcacctttacgagatgttaaaagagtacagtttggg
atattaagcccagatgaaattagacgcatgtcagttactgatggtggaatcaagtactct
gaggtcaccgagggtggccgccccaagttgggtggtctcatggatcctcgtcaaggcacc
attgacagatcggctagatgtcagacgtgtgcagggaacatctcagaatgtcctggacat
tttggtcatatagagcttgccaaaccagtatttcatataggttttcttgtgaagaccatc
aaagttctcagatgtgtttgtttcttctgctccaagcttcttgttgacccgacacaccca
aagatgaaagaaatattgtcgaagtccagggcttatccaagaaagcgattggtagcagtg
tatgatttatgtaaatcccgaaaagtgtgtgaaggaggagatgaaatggactcaaaactt
ggggatgacaaccaagatggagatcaaaagaagggacatgggggatgtggtagataccag
cccaaaatcaagaggaacggacttgagttaattgctgagtggaaagataccaacgaagac
tcgcaggagaaaaaaattatcttgacagctgacagagttcatgaaatattcaaaagaatt
tcggatgaagaatgtcaggtgttgggtatggatcctaagttctcccgtccagattggatg
attgttacagttatgccagtgccaccattggctgttcgaccagctgttgtcatgtttgga
tcagctagaaatcaggatgacttgacccataaactagcagacataatcaaagctaacaac
cagctacgacgaaacgagcagaacggagccgcctcccacatcatttctgaggacatgaag
atgttgcagtatcatgtggcaacatttacagacaatgaacttccaggtcttcccaaggct
gttcagaagtctggccgtccactgaaatctgtcaaacagaggctaaaggggaaggaaggt
cgtgtcagaggaaacttgatggggaaacgtgtggatttctctgccagaactgtcattacc
ccagaccccaacttgaggattgatcaagtcggtgtgccaaggtccattgcacagaatatg
accttcccagacctggtcactccattcaatatcgacagaatgcaggaacttgtgaggagg
ggagccaatcagtacccaggtgccaagtacatcattcgtgacaatggagaaaggattgat
ctgaggtttcaccccaaagcaagtgatctccatttacaaataggttacaaggtggaaaga
cacatgcaagacaacgactatgtagtgttcaatagacagcctactctccacaaaatgagt
atgatgtgtcacaaggtcaaagttttaccttggtctaccttcaggctgaatctcagtgta
accaccccatacaatgctgattttgatggagatgaaatgaaccttcacttacctcaatcc
ctagaaacaaaggctgaaatttccaatttggccttggtacccagaatgatcattacacca
caggctaacagaccagttatgggcattgtgcaggacacactgactgctgtgagaaaaatg
accaaaagagatgttttcttggacaggggccaagtgatgaaccttctcatgttcttgccc
cgatgggatggccatgttccccagccagcaattctgaagcccaagcccttgtggacagga
aagcagctgttctcattagtcatcccaggtcgtactaattgtatcagaacccacagcacc
cacccagatgaggaagacaaaggaccatacaagtggatttccccaggggacacaaaggtg
ctgattgaggatggtatgctgattagtgggattctgtgtaagaagacactgggaacctcg
agcggctcacttgcccatgttgttttcatggagtatggttttgaggtggcaggtttaatg
tatggtcacatccagtcattggtcaacaactggctgttgttggagggacacagcattggt
ataggggacactattgcagatccccagacctacatagatatccaggataccatcaaaaaa
gcaaagcatgatgtgatagaagttattgagaaggcacacaatgatgatttggaaccaact
cctggtaacaccctcagacagacttttgaaaatatggtgaaccgaatcttaaacgatgcc
agagataagacaggaagcaaagctcagaaatctctatcagattacaacaacttcaaggct
atggtggtggcaggttcaaagggatccaagatcaacatttcacaggttattgcatgtgta
ggacaacagaacgtggaaggaaaacgtattcctttcggtttccgacatagaactttgcca
catttcattaaggatgactatggtccagagtctagaggttttgtagaaaactcgtacctt
gccggattgacaccatcagagttctactttcacgccatgggaggtcgtgaagggttgatt
gatactgctgtcaaaacagcagaaaccggttacattcagagaagactgatcaaagctatg
gagagtgtgatggtgaaatatgatggaactgtgcgtaaccaggtggaacagttggtacag
cttcgttatggagaggacggactagatgcagtacatgtcgagttccagaccatgccaact
ctcaaaccttccaatagggcatttgagaggcagtttaaatttgatgcaacaaatgaaagg
tatatgaagaaatgcttatcagaggaagtgataaaggacctgatgggagatgcacattct
gtgtcacagttggagaaagagtgggatcagctgaaagaggacagggatattctccgttct
atcttcccaacaggagacagcaaggtggtcctaccttgtaatcttcagaggatgatctgg
aatgcacagaaaatcttccgtattgacgttcacaagcccacagacctacaccctattaaa
gttgtggaaggtgtggacgagctgtgtaagcgtctgaatgtggtagtaggggaggacagg
ctcagtgtccaggctaatgccaatgctactctattgatcaaatgtctggtcagatctaca
ctgtgtgctaagcgtgtgacagaggaattccgactgagctctgaggcatttgaatggctt
attggagaaattgaatccagattccagcaagctcaagtacatccaggtgaaatggtgggt
gcccttgctgcccagtctctgggagaacctgccacccagatgacactgaacactttccat
tatgctggtgtgtctgccaagaacgtaacccttggtgtgccacgtcttaaggaaatcatc
aacatatcaaagaaacccaagacaccgtccctgacagtgtatttaattggtcaggctgca
agagatgctgagaaagcaaaggatgtgttgtgcagattagaacacaccactctacgcaag
gtgacagcaaatactgctatctactatgatcctgaccctcaaaacacagttatttctgag
gatcaggagtgggtgaatgtgtactatgagatgcctgactttgacgtgtctaaaatatca
gcctggctgctaagaattgaattggacaggaagagaatgacagacaaaaaacttaccatg
gaacagatatccgaaaagataactgcaggatttggggatgatctaaattgcatcttcaat
gatgacaatgcagagaagcttgtcctccgcatcaggattatgaattcggatgagagcaaa
atgcagaatgaggaggatattgtagataaaatggaagatgatgtgttcttgagatgtata
gaagcaaatttattgtcagacatgactctgcagggaattgaagcgattgccaaggtgtac
atgcacttgccaaatactgaagacaagaagaggattttcattacagaggagggagagttt
aaagcagtggctgaatggatcctggaaactgatggtacagctctgatgaaggttcttagt
cagagagatgtagacccaatccgatccactaccaatgacatcgtagaagtcttctctatc
cttggtatagaggctgtaagaaagtccatagagaaggagatgaaccatgtcatttctttt
gatggctcctatgtcaactacaggcatctgtctctgttgtgtgactccatgacagccaaa
ggtcatctgatggcaattacaagacatggaatcaacagacaggaaacaggggccttggct
cggtgctcctttgaagaaacggtggatattttgatggaggctgcttctcatggagaaatg
gatcccatgaagggcgtgtcggaatgtataatggtaggccagctgtctagaattggaaca
gggagctttgatttgttactggatgctgagaagtgcaagtatggaatggagattccgacc
aacattggagcaggaatgccaggtggaatcggtactggtttgttctttggagctggaagt
agcccaacagcaggaatgtcacctcaaatgacaccatggcagcaaggagcaactccagcc
tacgccagtgcatggtcacctggagtgggcagtggaatgaccccaggagcagcaggattc
tcaccatctgctgccagtgagagtgggtacagtcctggctacagccctgcctggtcacct
cagccaggttcaccaggaccagcaagtccctacatacccagcccagggggagccatgtcg
cctagctactccccagcctctccttcttatgtgccctcttctcctgctgctacaccacaa
agtccaggatattcaccaactattacagtcctacttctccaagctattctccaacctctc
ccagttactctcccacaagtccaagttactctccgacctctcccagttattctccgacta
gtccttcgtacagtccttcaagtccttcttacagcccaagctccccaagttattctccta
caagccccagttacagcccaacaagcccaagttactctcccagcagtccaaagtacagtc
ctacaagtccatcttactcccccacaagcccctcgtattcccccagctccccacaatact
ccccctcatctcccaaatattctccttccagcccctcctattcccccagcagtcctaagt
acacccccaactctcccacttactccccttcctctcccaactatagccccacttctcccg
agtacagcccaagttctccgcgatacagtccaagtccaaagtattcccccacgtcgccta
cctattcacctaccagccctagacattctccggctagcccatcttattccccctcaagcc
cgcagtatacccctactagcccaacctacaccccatcatcacctcagtacacacctacca
gttcacggtactcaccagacacacctggatctcaatgaaaagcaggagggaagaaattcg
aatttttaagaattttattgcagaacaatggctcgttacgatagtgacgacgatagaaag
aaacgaaagaagaagaaaaagaagcattcccgatcaagatctaggtcaaggagtaggaga
agagacaggagtcccaaaagcaggacaacagaagatcctttcacaaatgttcccggtttt
gcagacatgacaccctctgagcaggctcaggtcaggatgcaaatggcactaaaagctgca
gctgcagcagatgagaaaattaaggagcagacaacaagctcttcagaaagtaaatcacac
aaggaacaactccagttctctaatgctatcaaagacatcgagagctcctcctttgttcag
tcgacattcttctccaatagatcagacaaagacaaaacaagctcaaagaaagaggaagag
ttcttctttggtactgctgctgagttcaaacctgacatggctgtgaaaaaaatcctggag
gtagatgacctgtcaaagctggctcactccaatctgtttgtggatccggaagtcaaaatg
gatcagtggattgagagactaaaatctcttagacaaagaaaactggaaggagaagttata
atgcaggttatagaagacatggaaggaagacttagaaactgtgaaagaacacacggacca
gagactttgaaaacagttcagcacaatacagaagaccctttttcatattcatctttgaat
aaaaactacagaattccgaaaatgacaactgaagaaagggaccacaaacaaatgctgaaa
gatagtgggattgatacgaaaggaatgacaaaagatgagatattacagattgtggaagtc
cttgagctgtcaaaacaggatgtgtcggagaatgcttaccatagccaatctgaccaatcg
gaaccaacctccccaaaaaccattcaatcaaagagtgcctcacaggaattcagtacacca
aatagaggaactcaaggatcgagccagtcacatgctgctactgtgactgaaagtacgacg
ggggacagagactccagacaacagtccaaccacgggggaaacaacaagccagttagtagg
acgagttttagactctcagaaacaccagaagaggaggatggggaagatgtttctgttgtt
aataaaaggcaggctaatagaaaagtaacagcagctgtggaaggttctacaaagacgtct
gaaacaacctcagggccagaacttcatgaaggaatgattgacaaggtagttagaacttgc
aggaaagcaagtgcatcagtgttcagaaattttactgcaaaacgaaagacaacacggagc
cctgtaataattgcagattcgtctgataacgaggagcagagtgaagatgactttgaaaca
aaagtaaggaagaattcccacaagaggatgatactggaaagtagcgatgaagacactcag
gagtttgtcccagcaaagcaaaagaatgtagctgtctcaaaaagaatgaaactgatgtct
tctgatactgagactgtaaaggatagccaggaggaagataaccagaggtctctatccccc
acagcaattgaactggagaatttcaagcaggatctcgaagataagaatacttacaggtca
cttggtagacattacagaaaagtgaggagaaggagtggcagaaacaaaaacttgactcct
ctttatgcacctgatcttaaaaaggtggaaaactggacccgggtgatcttacaagtattt
gagatttatcatcgaaaactcttccatctgcaatctaagtcacaaacatatctagagcaa
ggggaaccagtaaaagctggccggcatgcagaaaaaaccattgatgtcaagaggcgcggc
cagcaggaggctgaaatgttcaattctgtagaggaggaggatgtagagtttgcgacggtg
aataacgcaaacggccaattttgtttgaatgaaaattctactgatttgacaactaatcca
gccaataaagatggaagaactggtgcaggcaagcaaacgagacctctgaagctgactaaa
ccaagaagaaaggcaaacaaagataaagacgaagaaaagaatgtgtttgattttgtggag
aatgatgatggcctggtggaagtggtagataaaggtagtcaggtggcgtactctcctgca
gagaaagaggatgtggagctgtccgagtatttcatgggaggaaacaaagaaaatcatgga
gggggtgtgcaaggggagaagattgttaaggataggcacactcctgacatcttgatggga
gaagatgcagatatatttccaaagtctgtcagaaaacctgctcctaaacgaattggaaag
gtttcccagggaagtggaaaaccagagaaacaattacagtttgatgtcaaagcacttaga
agtagagttactaaaagtgaaaataatgaaagtggcacccttgatagcaacgagtctaaa
ttgaatgaaaagttgtcaaaaacaaggctaaagaggtatcatagtgatattagtacagcc
agttctgattcgacatctcgaatggaggaggactttatccaagagttggcaaagaaagac
aaattaatgaaagcaggaacattacatcctaccaagagtcccgagataatgattaatcca
gagggcgacgtctacgctacccaggtgtgtgcaatggaggagaagcattcaaataacttt
gaaggaaatgaagaaataatggatacacaagtgactgaaaattattttaatgttggggat
aacgatggtaaaattaatctaagccctttggttagcggtaagactatgtggagagataat
tctaaatgtgtggatgagacagaaaataagtttgatgattcttcgaaggtgaattctgtt
gatgagatcattgcagatgactcggacgaggaagtcatatttaatgttaaatctccagga
gaggaaaatgtacaaaagaaaaaaaagagcagggatcaggatggtgaggtcagactgaac
ataaagagaagatacggaccaagcaaggtgaggaagttccagatacccgatcctgaagaa
gaccgtgaggctcaaacttcaagtgaggtcaaggtgagggcggaaggagatgtcaatgaa
agtgatgatgaatggctgccggtcagccattggactaaagataaacgaaccacaaagacc
tatgcaaagagaaccaaaactaatgaaaattcctgcaaacctccacctaagatttcagaa
aaggtgtcttgtcccatgtgttataggaagtttgacagtgaccacatagaaacccatgct
gcccagtgtgagggagagatcaatgatggtgcccatgaaagcatggatacagagacaaac
agaaaccaaggcaattcatcaacatccgagaaaatggatgtctgcatagtgtgtgagaaa
ccattgccacatggatatcaggactatgcccatcctcagtgtttgaaggaagctactcag
gcacagcacatggtagataacaaaagttttcccagcatgcaagctgaggagccacggacc
actagatccagggggcggtctcaacaatcaaaatcagccaatcaaagctcggaccagtca
aacatttttgaaggataa
DBGET
integrated database retrieval system
