Ostrea edulis (European flat oyster): 125667675
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Entry
125667675 CDS
T09123
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03020
RNA polymerase
oed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125667675
09124 Replication and repair
03420 Nucleotide excision repair
125667675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oed03021
]
125667675
03400 DNA repair and recombination proteins [BR:
oed03400
]
125667675
Enzymes [BR:
oed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125667675
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125667675
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125667675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
125667675
NCBI-ProteinID:
XP_048757218
LinkDB
All DBs
Position
9:complement(33636624..33660671)
Genome browser
AA seq
1177 aa
AA seq
DB search
MYSQEEDMIYETEDDGDEITADLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRI
VEDSPQIDLQAEAQHTTGVVETPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNL
TYSAPLYVDITKTVVKEGEDPVETQHQKTFIGKIPIMLRSTYCLLNNLVDRDLTELNECP
LDPGGYFIINGSEKVLIAQEKMATNTVYVFQQKDSKYAFKTEIRSCLEHSSRPTSTLWVN
MMARGGGGAKKSAIGQRIIGILPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMM
EMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCE
TKKAYFLGYMVHRLLLAAIGRREVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLY
AQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFAST
LSHLRRLNSPIGRDGKLARPRQLHNTQWGMICPAETPEGSAVGLVKNLALMAYISVGSQP
SPILEFLEEWSMENLEEVAPSAIQDATKIFVNGCWVGIHRDPEQLMNTLRKLRREMDIIV
SEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKQSHIKQLKQREYNNYSWQDLVA
SGVVEYIDPLEEESIMLAMTPDDLSDKDVQYCSTYTHCEVHPAMILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHGLLYPQKPLVTTRSMEYLRFRELPAGINS
IVAIASYTGYNQEDSVIINASAIERGFFRSFFFRSYKDSESKKGMDQEEVFEKPTRESVQ
GMRQAVYDKLDEDGIISPGIRVSGDDVLIGKTLTLPANEDELEGTTKRFSKRDASVFMRR
SETGIIDQVMITLNQEGYKFCKIRVRTVKTPQIGDKFASRHGQKGTCGITYRQEDMPFTC
EGITPDIIINPHAVPSRMTIGHLIECLQGKVAANKGEIGDATPFNDAVNVQKVSNLLHQY
GYHLRGNEVLYNGFTGRKLNAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILNRQPMEGR
ARDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNFCGLIAIANLRNQTFECR
GCKNKTQVSQIRIPYACKLLFQELMSMSIAPRLMVLQ
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtatagccaagaggaagatatgatatatgaaacggaggatgatggagatgaaatcacc
gcagatctctggcaggaggcgtgctggatcgtcatcagttcatactttgatgagaagggt
ctggtacgacaacagctagactcatttgatgagtttatccagatgtctgtacagagaata
gtggaagattctcctcagattgacctacaggcagaagcacagcacaccacgggagtcgtg
gagacgccgccacgatacctgctgaaatttgaacagatttacctttcaaagcccactcat
tgggagaaagacggagctccgagtcctatgatgccaaacgaagccagactccgaaatctt
acatactcggcaccactctatgtagatatcaccaaaactgttgtcaaagagggagaagat
cccgtggaaacccagcatcaaaagacgttcatcggcaaaatacccatcatgcttcgctct
acctactgtctcctgaacaacctagtggaccgtgacttgacagaattgaacgagtgccca
ctagaccctggggggtacttcatcatcaatggttcggagaaagttctgattgctcaggag
aaaatggccacaaacacagtgtatgtcttccaacaaaaggactcgaagtatgccttcaag
acagaaatccgatcgtgtctagagcattcctctcgccccaccagtacgctgtgggtcaac
atgatggcaagagggggtgggggtgccaagaaaagtgccataggacagaggattatagga
attttaccatacattaaacaggagatccctatcatcatagtgttccgagcccttggcttc
gtgtcggatcgagacatcctggagcacatcatatatgattttgatgacccagaaatgatg
gaaatggtcaaaccatccttggacgaggctttcgtgatccaagaacaaaacgtggccctt
aattttataggttccagaggggctagacctggagtgacaaaagaaaagcgaatcaagtac
gcaagggaaatcctacagaaggagatgctgccccacgtcggcgtcagcgacttctgcgag
acaaagaaagcgtatttcctcgggtacatggttcaccgattgttactggcagccattggt
cgaagagaagtggatgacagagatcactatggaaacaagcgtctggatttggcaggtcct
cttttggcctttttgttccgagggttgttccggaaccttatgaaggaggttaggctctat
gcccagaagttcattgaccgaggtaaagacttcaatctggagttggccattaagaccagg
attatcacagatgggctgaaatattccctcgccacagggaactggggcgaccagaagaaa
gctcaccaggctagagctggggtctcacaggtgttgaataggttaacatttgcctccaca
ctctctcaccttagacgattaaactcgcctattgggcgggacggaaagttggcgagacct
cgtcagcttcacaatacgcagtggggaatgatctgtccagctgaaacacctgagggcagt
gctgtaggactggtaaagaatctggcgctgatggcctacatttccgtcggttctcagccg
tcccccatcctggaattcttggaggagtggagcatggagaacttggaggaggtggcgccc
tctgctatccaagatgctacaaaaatatttgtgaatggctgttgggttggaatccataga
gatccagaacagctgatgaacacattgcgtaaacttcggcgtgaaatggacattattgtg
tctgaggtctcaatgatccgagatatcagggatcgggagattcgaatttacacagacgct
gggcgaatctgtcgtccactgttaattgtggagaatcagaaactcctgttgaagcagagt
cacattaaacaactgaagcaaagagagtacaataattacagctggcaggacttggtagcc
agtggggtagtggagtacattgatcccctagaggaggaatccatcatgttggctatgacc
ccagatgacctctcagacaaagatgtccaatactgttctacgtacacacactgtgaggtc
cacccagccatgatcttaggagtctgtgcctccatcattcccttccctgatcacaaccag
tccccccgtaacacatatcagtctgctatgggtaaacaagccatgggggtgtacatcaca
aactttcatgtcagaatggacaccctggcccatggtctcctgtatcctcagaaaccactg
gtcaccaccagatccatggagtacctgcgattccgagagctgccagcaggcatcaactcc
attgtggccattgcttcatacactggatacaatcaggaagattctgtcatcataaatgcc
tcagccatcgagagaggcttcttcagatcatttttcttccgatcttacaaagattctgaa
tcaaagaaagggatggaccaggaggaggtgtttgagaaaccaactcgagaaagtgtgcag
ggtatgcgacaggcagtgtatgacaaactagatgaagatggaattatctcccctggcatt
cgagtctcaggagatgatgtgcttatcgggaaaactctcacgcttcctgccaatgaggat
gagctggaaggtacaaccaagagattttccaagcgagacgccagtgtgttcatgaggagg
agtgagactggaataatagaccaggtgatgataacattgaaccaagagggttacaagttc
tgtaagatccgtgtgaggacagtaaagactccacaaatcggagataagtttgctagtcgt
cacggacagaaaggaacgtgtggtatcacctacaggcaggaggacatgccatttacgtgc
gagggtatcactcccgacatcatcattaatccccatgctgtgcccagtcgtatgaccatt
ggtcacttgatcgaatgcctccaggggaaggtagctgccaacaagggggagattggagat
gccacgcccttcaacgacgcagtcaatgtccagaaggtgtccaacctgctgcatcagtat
ggctaccacctccgaggaaatgaggtgctatataatggcttcacagggaggaaactgaat
gctcagatcttcctgggacccacatactaccagagacttaaacatatggtggacgataag
atccactcgcgggctcgaggcccactacagatcctcaatagacagcccatggagggcaga
gcaagagatggagggttgcgttttggtgaaatggagcgagactgtcagattgctcatggt
gccgcccagttcctgcgagagcgcctctttgaggcctccgatccctaccgtgtccatgtg
tgtaatttctgtggtctcatcgctatagcaaacctacgaaaccagacctttgaatgcaga
gggtgcaaaaacaaaactcaggtctcccagattcgtattccatacgcctgcaagctcctt
ttccaagaactgatgtccatgagcattgctcctcgtctgatggttttgcagtga
DBGET
integrated database retrieval system
