Olea europaea var. sylvestris (wild olive): 111407478
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Entry
111407478 CDS
T05244
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111407478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111407478
Enzymes [BR:
oeu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
111407478
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111407478
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
AAA_16
FtsK_SpoIIIE
ABC_tran
ATP_bind_1
DUF1611
SRPRB
MMR_HSR1
AAA_29
AAA_24
Motif
Other DBs
NCBI-GeneID:
111407478
NCBI-ProteinID:
XP_022892743
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Position
13:7886483..7892382
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AA seq
438 aa
AA seq
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MSYGGPAVGSTAASGPATIRQVKLEKECEFRVEVSPDAPLRLRLLIGSAEIYGTEIPPEI
WLTFPPRLKFAVFTWYGATIEVDGTTETDYTADETPMISYVNVHAVLDARRNRAKASPGD
SDASQGPRVIVVGPTDSGKSTLARMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPI
ELPIDPVEGIPLDMPLVYFHGHTTPSVNVDLYKVLVKELAQILERQFAGNAESRAAGMVI
NTMGWIESTGYELLLHAIDTFNATVVLVLGQEKLCSMLKDVLKNKPNVDVVKLQKSGGVV
SRNAKFRQKARSHRIREYFYGLSNDLSPHSNVANFSDLCIYRIGGGPQAPRSALPIGAEP
AADPTRLIPVNINRDLLHSVLAVSFAKEPDEIISSNVAGFIWITDIDFESKKITYLAPSA
GSLPGKYLIQGSLIWYEP
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatggaggcccagccgtaggttcaactgctgcgagtggcccggcaacaataaga
caagtgaagcttgaaaaggaatgcgaattcagagttgaagtcagtcctgatgcgccactc
cgcctccgtctcctcatcggctctgccgagatatacggaaccgaaataccgccagagata
tggctaacttttcctcccaggcttaaattcgctgtttttacatggtacggtgccacaatt
gaagtggatggtacaactgaaactgattatacagcagatgagacacccatgatcagttat
gtgaatgttcatgctgtactggatgctcgaagaaaccgtgccaaagcttcacccggcgat
tcagatgcttctcagggtcctcgggttattgttgtgggacctacggattctggaaagagt
actttggcgaggatgcttcttagttgggcagctaaacagggatggaaacctacttttgta
gatttagacattggtcaaggatctataacaattcctggttgcattgctgcaactccgatt
gaactgcccattgatccagtggaaggaatacctcttgatatgcctctagtttacttccat
gggcacacgactcctagtgttaatgttgatctatacaaggtacttgtgaaggagcttgct
caaattttggagagacagtttgccggaaatgccgaatctcgagctgcaggcatggttata
aataccatgggatggatagaaagcactggttacgagttgctgctccatgcaattgataca
tttaatgcaactgtcgttcttgttctgggccaggaaaagctttgcagcatgctaaaagat
gttttgaaaaacaagcctaatgtggatgtagtgaaacttcaaaagtctggtggtgttgtg
tcgagaaatgcaaaattccgtcagaaggccaggtcccatagaatacgggaatatttttat
ggcctttcgaatgatctctctccacattctaatgttgcaaatttcagtgacttatgcatt
taccgaataggcggaggaccacaagccccacgttcagctctgccaattggtgcagagccg
gctgcagaccctacaagattgatccctgttaatattaaccgagacttgctccattcagtc
ctagctgtctcatttgccaaagaaccagatgaaattatttcaagtaatgttgccgggttc
atctggatcactgacattgactttgaaagcaagaaaatcacataccttgcaccatctgct
ggaagccttcccgggaaatacctgattcagggaagcctgatatggtatgaaccttga
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