Oryza glaberrima (African rice): 127784494
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Entry
127784494 CDS
T08853
Name
(RefSeq) serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1
KO
K03456
serine/threonine-protein phosphatase 2A regulatory subunit A
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127784494
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ogl01009
]
127784494
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127784494
03036 Chromosome and associated proteins [BR:
ogl03036
]
127784494
Protein phosphatases and associated proteins [BR:
ogl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
127784494
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
127784494
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
127784494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT
HEAT_2
HEAT_EZ
Vac14_Fab1_bd
PDS5
Htt_N-HEAT_1
SCD
Cnd1
Adaptin_N
CLASP_N
CEP104-like_TOG
V-ATPase_H_C
DUF3102
Motif
Other DBs
NCBI-GeneID:
127784494
NCBI-ProteinID:
XP_052167777
LinkDB
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Position
9:complement(3218617..3225057)
Genome browser
AA seq
587 aa
AA seq
DB search
MASMDEPLYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDE
DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGAQMKES
DIVDWFVPVVKRLAAGEWFTARVSSCGLFHIAYPSAPDQLKAELRTIYGQLCQDDMPMVR
RAAASNLGKFAATVEQNYLKTEVMSIFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEHSREQLVPAYVRLLRDNEAEVRIAA
AGKVTKFCRILSPQLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLL
PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
IPLLASQLGVGFFDDKLGALCMQWLEDKVFSIRDAAANNLKRLAEEFGPEWAMQHIIPQV
LEKINNPHYLYRMTILQAISLLAPVMGAEITCQQLLPVVINSSKDRVPNIKFNVAKVLQA
LIPILDQSVVEKNVKPCLVELSEDPDVDVRYYANQALQACDQIMMSS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgatggatgagcctctttatcccattgctatactgatagatgagctcaaaaac
gaagatattcaattgcgtctgaactccattaggaggctctccacaattgcacgagcactt
ggagaagaaagaacccggaaggagttaattccttttctcagtgaaaataatgacgatgaa
gatgaggtgcttcttgctatggctgaagaattgggtgtgttcattccttacgttgggggt
gtagaacatgctcatgttttgctaccaccattggagacattgtgtacagtggaggaaacc
tgtgtccgagacaaggcagttgaatctctgtgccgtattggagcacagatgaaggaaagt
gacattgtagactggttcgttccagtagtaaagaggctagcagctggtgagtggtttaca
gctcgagtatcgtcttgtggacttttccatatagcatatccaagtgctcctgatcaattg
aaggcagaattgaggaccatttatggtcagctatgccaagatgacatgcctatggtccga
agggcagctgcatcaaatcttggaaagtttgcagccacagttgaacagaactatctaaag
acagaagtcatgtcgatatttgatgatctaacccaagatgatcaagattccgtacgcttg
ttggcagttgaaggctgtgctgctcttgggaaattgttggaaccacaagattgtgtagca
catatccttccagttattgtcaatttctcccaggacaaatcatggcgagttcgttatatg
gttgccaatcaattgtatgagctctgcgaggcagttggtcctgaacattctagggagcag
ttggtgccggcatatgttcgtctccttcgtgacaatgaggctgaagtgcggatagcggct
gcagggaaagttactaagttctgtaggattttaagtcctcagcttgcaattcagcatatt
cttccttgtgtcaaggaattgtcatcagattcatctcagcatgttcgttcagctttggct
tcagttattatgggaatggccccggtcttgggaaaggaggctacaatcgaacaacttctt
cctattttcctttctttgctcaaggatgaatttcctgatgttcggctcaatataatcagc
aagctcgatcaagttaatcaggttattggaattgatttgctgtcacaatcactgttaccg
gcgatcgtagaacttgcagaggataggcactggagggttcggcttgcaataattgagtac
attcctttattggctagtcaattaggcgttggatttttcgatgacaagctgggggcactt
tgcatgcaatggttggaagataaggtcttctcaatcagagatgctgctgcaaacaacttg
aagcgcctagctgaggagtttggtccagaatgggcgatgcagcatataatccctcaggtg
ctggagaagataaacaacccgcattatctctaccgcatgaccatcctgcaagctatttca
ttgctggcccctgtcatgggtgccgaaatcacttgtcaacagctgctccctgttgtgatt
aattcctcaaaggacagagtgccaaacatcaaattcaatgttgcgaaggttctgcaggca
cttataccgatccttgatcaatctgttgtggagaagaacgtgaaaccatgcctcgttgaa
ctcagtgaggaccctgatgtggatgtaagatactatgcaaaccaggcccttcaggcatgc
gatcaaatcatgatgtcaagctaa
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