Oncorhynchus gorbuscha (pink salmon): 123997760
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Entry
123997760 CDS
T07892
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
123997760 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ogo04090
]
123997760 (vcam1b)
04091 Lectins [BR:
ogo04091
]
123997760 (vcam1b)
CD molecules [BR:
ogo04090
]
Proteins
123997760 (vcam1b)
Lectins [BR:
ogo04091
]
I-type lectins (Siglecs)
123997760 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
C2-set_2
C1-set
V-set
ICAM1_3_5_D2
ICAM_N
Ig_C17orf99
REJ
Pedibin
Motif
Other DBs
NCBI-GeneID:
123997760
NCBI-ProteinID:
XP_046158248
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Position
LG02:complement(15975739..15988289)
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AA seq
806 aa
AA seq
DB search
MSLLWIVILPVTAFAFHVELKPKSAFFRVGDRQELRCSVKDCNEKVTMSWALLGDKPMFA
KIHTSGSESVAAFDPVMTVHDDILLCKVSCGALTKQQRVVVKVYSFPDAPVISGYDHLLL
GQSNTLTCEVIDAYPVEHLRLEWLRGDSMLQTDAESVVSTYRFTPTPEDKETSITCRASH
DQDGVPDEEKTKETTVSLTVLYAPQNISISEPTAVRVGSSLMLSCHAEGNPRPDTQWKAI
GPDGQAVIVGQSEELVLTEMTLVDAGQYECVVSNTIGNITASVNVIVQAPPTNTTITVSP
ASEVKEGESVTVSCLSDGAPVVRMVLRRLSEDQDVELQSSNGFSTSFTLSSALLADSALY
QCQAFNEHGSQKVSALLSVEEYPLEVAMDVGVTAEMGSNLVLSCRAWGCPQPAFYWSSML
DMSVHSRAHTQDSLSQLYLGPLGLINEQAYTCEAKCGSVIKAKHAEVKVFSFPSDPIIEN
TGPFLEHGVGIFFCSVANVYPASLLQIQWLDGEIELASEMGQYSSELQNVTSTLSFSIGP
EDQGRQITCRVSLQMDEVPQSGRERQAVTVLELHYAPRGTTITVSPANEVKEGESVAVSC
LSDGVPVGHMVLRRLSEDQDIELQSSNRFSTSFTLSSALLADSALYRCEAFNELGSQRAS
TYITVKAPPRNTTVLIYPSAEVQEGQNVTICCHSVSFPPPAVVLRKLDNGTELYSPDGNF
LLVNLTPNDTGLYQVNVTNDLGYETEIFSINVIEKHSSTSPDWNHVVIPAVCVGIMVTTT
GLILDYLRRARRKGFYELAKCKPRSA
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgttatggatagtgatactaccagtaacagcctttgcatttcatgtggagcta
aaaccaaagagtgcatttttcagagttggtgataggcaggagctgcgatgttcggtgaag
gattgtaacgaaaaggttactatgtcctgggctttgctgggggataagcccatgtttgct
aaaatacacacctcaggatcggaatccgtggcggcctttgaccctgtgatgacagtacat
gatgacatacttctctgcaaagtcagttgcggagcattgaccaaacaacagcgtgtggtt
gtcaaagtgtactcatttccagacgcacctgtcatatcaggctacgaccatcttctcttg
ggccagtccaacactctgacatgtgaggtgatagatgcttatcccgtggagcacctgcga
cttgagtggctgcgaggagacagcatgctccagacagacgcagagtccgttgtatctacc
tacaggttcacgcccaccccagaggacaaagagacaagcatcacatgcagagcctctcac
gatcaggatggtgtgcctgatgaagagaagaccaaggaaaccaccgtatctctcacagtg
ctttatgcgccacagaatatatcaatatctgagccgactgctgtgagagttggctccagt
ctcatgttgtcatgccatgctgaagggaaccccagaccagatacacagtggaaggccatt
ggtccagatggacaggctgttattgtggggcagagcgaggagcttgtccttacagagatg
acactggtggatgctggtcaatatgagtgtgtggtgagcaacaccattggaaacatcaca
gccagcgtgaacgtcattgttcaagctcccccaaccaacactaccatcacagtgagccca
gccagtgaggtgaaggaaggggagagtgtgacggtgtcctgcctgtcggacggagctccg
gtggtacgtatggtgctgaggagactctctgaggaccaggatgtagaactccagtccagc
aacggattctccacctccttcaccctctcctctgccctgctagcagactctgctctctac
cagtgccaggccttcaatgagcacggcagtcagaaggtcagcgccttgctctctgttgaa
gagtatcccctggaggtggcgatggatgtgggggtgacggctgagatgggatccaacctg
gtgctctcctgccgggcttggggctgtccccagcctgccttctactggagcagcatgctg
gacatgtccgtccatagccgtgcacacacccaggactccctctcccagctctacctgggc
ccacttgggctgatcaacgagcaagcctacacctgtgaggccaagtgtggctctgtcatc
aaggccaagcacgctgaggtcaaggtcttctctttcccctcggaccctatcatcgagaac
actggcccctttctggaacacggagttggcatctttttttgttcggtagccaacgtctac
ccagccagtctcctgcagatccagtggcttgatggggaaatcgagctagcctccgagatg
ggacagtattccagtgaactccagaatgtgacgtcaacgctttctttctcgattggaccg
gaggaccagggcagacagatcacctgcagagtcagtcttcagatggatgaagtccctcag
agtgggagagagaggcaggcagtgactgtactggagctccactatgcccccaggggaacc
accatcacagtgagcccagccaatgaggtgaaggaaggggagagcgtggcggtgtcctgc
ctgtcggacggagttccggtgggacatatggtgctgaggagactctctgaggaccaggat
atagaactccagtccagcaacagattctccacctccttcaccctctcctctgccctgcta
gcagactctgctctctaccggtgcgaggccttcaatgagctcggcagccagcgagctagc
acatacattacagtcaaagcacctcctaggaacacaacagtcctgatatatccatctgct
gaggtgcaggaaggccaaaatgtcaccatctgctgtcactctgtcagtttccccccacct
gctgtggttttaaggaaactggataatggcacagagctctactccccggatgggaacttc
ctgctggttaaccttacgcccaatgatacaggcctataccaggtgaatgttaccaatgac
ttgggttatgagaccgagatcttcagcatcaacgtcatagagaagcactccagtacttca
ccagactggaaccacgtagtcattcctgctgtctgtgtgggtatcatggtgaccaccacg
ggcctaatcctggactacctgaggagagccaggaggaagggtttctatgagctggcaaag
tgtaagcccaggtctgcatag
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