KEGG   Oncorhynchus gorbuscha (pink salmon): 123998578
Entry
123998578         CDS       T07892                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03020  RNA polymerase
ogo03420  Nucleotide excision repair
ogo04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123998578
  09124 Replication and repair
   03420 Nucleotide excision repair
    123998578
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    123998578
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ogo03021]
    123998578
   03400 DNA repair and recombination proteins [BR:ogo03400]
    123998578
Transcription machinery [BR:ogo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     123998578
  RNA polymerase III system
   RNA polymerase III
     123998578
  RNA polymerase I system
   RNA polymerase I
     123998578
DNA repair and recombination proteins [BR:ogo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      123998578
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-GeneID: 123998578
NCBI-ProteinID: XP_046159514
LinkDB
Position
LG16:complement(19633452..19636109)
AA seq 127 aa
MSDNEGDFDDGDFDDAEEDEGLDDLENVEDEDQENVKILPAGEGSQANQKRITTQYMTKY
ERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKCRKIPIIIRRYLPDGSYEDWGC
DELIITD
NT seq 384 nt   +upstreamnt  +downstreamnt
atgtccgataacgaaggagattttgatgatggagactttgatgacgctgaagaggatgag
ggattggatgacctggaaaacgttgaagatgaggatcaagagaatgtgaagatcctgcct
gcaggggaggggtcgcaggctaaccagaagaggatcacaacccaatacatgaccaaatat
gaaagggccagggtgctggggacacgtgccctccagatagcgatgtgtgccccagtcatg
gtggagctggagggagagacagaccctctgcaaattgccatgaaagagctgaagtgcagg
aagatccccatcatcatccggcggtaccttcctgatggcagttatgaggattggggctgt
gacgagctcatcatcacagactga

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