Oncorhynchus gorbuscha (pink salmon): 124021622
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Entry
124021622 CDS
T07892
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04010
MAPK signaling pathway
ogo04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124021622
04020 Calcium signaling pathway
124021622
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ogo04040
]
124021622
Ion channels [BR:
ogo04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
124021622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
124021622
NCBI-ProteinID:
XP_046192715
LinkDB
All DBs
Position
Unknown
AA seq
2396 aa
AA seq
DB search
MTDGEGRVRFLYTTTPSTPTPTSTTPTLTLTPALNVQQGGEERRCRDGEVRVLIPAPFYR
EHNPHPSPFYREHNPPRRHHHDIGFRDDDEDEEEEGGSSTRSPGPEEEEEEEEREEEGAG
VAARCVPGPPVVVTGGSSSGGVFGNVRREPVTEPVTEPVDPVDLLSEEEEQQPYPALAPV
VFFCIKQTTRPRSWCLRTVCNPWFEHVSMIVILLNCVTLGMYQPCEDVTCQAEWCLILQV
FDDCIFAFFAVEMVIKMVALGVFGSKCYLGDTWNRLDFFIVMAGMMEYSLDGHNASLSAI
RTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRN
RCFMGEDFRTLYNLSLSVYYQPDESEEDPFICSAIRENGMLRCHDVPPYSEGGVECSLPA
PSLGGEGGARDGCVNWNQYYNVCRPGNVNPHKGAVNFDNIAYAWIAIFQVITLEGWVDIM
YYVMDAHSFYNFIYFIFLIIVGSFFMINLCLVVIATQFAETKQRENALMREQRARYMSND
STLASYSEPGSCYEEMLRYVSHLYRKLTRRVQRVYTTWHSKRRKKVNPNGGGSGPGVGRR
TSGHAPWLRPVHNLLQHHQRHHCRHSNGGHTPVATGGEELEMRSLPVPGRDPSVTPGLGS
SLLGRLNGGMNYPTILPSFVCSYRSFTPKPLPTQHHIPTHPHNPLPTHPHNPLPTNLHSP
LPTSHGPHPTQPHIPLPTQPYSPLSRHPHSPQPTEPHIPLPTQPQRPLPSQPSPLSENSP
DPLSKLHQLMGQHSRPRLLYQLAGVVPSPLLLELLGCPLCARALEGMELDLSDLEGGRGG
RGRRRRKTGLGAGLGLGVKRASNRLLDLGIAFRDRLKRIVDSKYFNRGIMTSILINTLSM
GIEYHQQPVELTDILEISNIVFTCMFLLEMLFKLLAFGLFGYIKNPYNIFDSIIVIISVW
EIVGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLMKTMDNVATFCTLLMLFIFTFS
ILGMHLFGCKFNQQMENGDTIPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPL
SSLYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRADSDDDKRSDDDGEEEKKEKVEEL
KDTELKMYSLMMTANGHADRNTLAPPITITRTAATPVPTPKSSLGPESVLGEGLVYGDVC
SDFGDSRRGSAAASIDPSAYDQRSLSSPGQHSPLPPRGQGSVSGWGSRRSSWNSLNRSRT
SGERESLLSGEGGGEEEEGALELLQVSSLGPSVTGEYGDCNGRSLHHMTYDPNKDLSPDD
DMEEDNLWFRVRRTLQSHKPRWCREHEDWNLYLFSPQNSFRVWAKGMISHKMFDHVVLLF
IFLNCITIALERPGILPHSTERVFLSVSNFVFTIIFLAEMTVKIVALGFCWGKQSYLKSS
WNVLDGILVFVSLVDILVSLALTGGNRILGILRVLRLLRTLRPLRVISRLSPGLKSLFKG
KFYLCEGPDTRNISTKADCLLANYRWTRRKYNFDNLGQALMSLFVLSCKDGWVNIMYDGL
DAVGVDQQPVRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQDQEEEEQRLRE
EKRLKILEKKRRSKEKDGAEAQQRPYYADYSPVRLSIHTLCTSHYLDLFITVIIGINVVT
MSMEHYNQPQYLEEALKYCNYLFTCIFIIETLLKLVAFGLHRFFKDRWNQLDLAIVLLSI
MGITLEELKMNASLPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVMQALPQVGNLG
LLFMLLFFIYAALGVELFGKLECNDSNPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGI
MKDTLRECRPEERSCLTYLPLMSPVYFVTFVLMAQFVLVNVVVAVLMKHLEESNKEAKED
AEMDAEIALEMERARRLSSASNASALGGAYVGPRPHSPGQEEEGQCSQEEELLSPRKMSV
SRMHSLPNDSYMFPPVRCDSAPYPLQEHSSPLHQASVFSSGSVTSVHSQPCEDQAVLPGL
SHPGPPHIAPPRPSPRGLRRQVAVKVQSVASVDRQDPLSTLRLLSPSPSRPPSPPFLSDP
ADEEVWHITSSARHWWDRHGSGRCHSLSPYASPDSPPSLRSRGSALSLLGAGLQAHDPRK
GFSVDTQGFLDKPRCPDDQRRHSIEICPSPPEDPLLGELDGEERRPRGPGSEVRGHRKKR
MSPPCISIHPPCDPAGRAPSDPQADCNPLLRRRTPSYDVADAHTPTHRLTPTHTPTLTPT
HHHTLIQTLPHAVTHTPTHTHTHRLPHAHTLIRTHTLPHSHTHTPSPTHTLSLNSDTRPS
SLYSDYKPLPQFTFDQPEHRYTSGMSAGLSSIEPATSPSHFNSRAGFSSMNRRTAQ
NT seq
7191 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgaggggagagtccgcttcctctacaccaccaccccctctacccccacc
cccacctccactacccccaccctcaccctcactcctgccctcaacgtccagcagggaggg
gaggaaaggcggtgccgtgacggagaggtgagggttctcataccggctccattttaccgg
gaacacaacccacacccatcaccgttttaccgggaacacaaccccccgagacgtcaccac
cacgacatcggcttccgcgatgatgatgaggacgaggaagaggagggaggcagcagcaca
cggagtccagggccggaggaggaggaagaggaggaggaaagggaggaggaaggtgcagga
gtagctgcccgttgtgtcccggggcctcccgttgttgttaccggaggtagtagtagtggt
ggtgtgttcggtaacgtgaggagggagccggtaacggagccggtaacggagccggtagac
ccagtggacctgctgtctgaagaggaggagcagcagccatatccagccctcgcccccgta
gtcttcttctgcatcaaacagacgacgcgtcctcgcagctggtgtctacgcacggtctgt
aacccgtggtttgaacatgtctctatgatagtgattctcctgaactgtgtgactctgggg
atgtaccaaccctgtgaagacgtcacctgtcaggcagagtggtgcctcatactacaggtg
tttgacgactgtatctttgcgtttttcgcggtggagatggtcattaagatggtggctctg
ggggtcttcggttctaagtgttaccttggcgacacttggaaccgactggacttcttcatc
gtaatggcagggatgatggagtattctctggacggacacaacgccagtctgtcagctatc
aggactgtacgcgttctgcggccactccgggcaatcaacagagtccctagtatgcgtatc
ctggtgactctgctcctagacactctccccatgctggggaacgtcctgctcctctgtttc
ttcgtcttcttcatcttcggcatcgtcggcgtgcagctgtgggcggggctactgagaaac
aggtgcttcatgggagaagacttcagaacgctctataacctgtcattgagtgtgtactac
cagccggacgagagcgaggaggaccccttcatctgctcagcaattcgggagaacggaatg
ttgcgttgccatgacgtcccgccctacagcgagggaggggtcgagtgctcgctgcccgcg
ccctctcttggcggggagggcggggccagagacggctgtgtgaattggaaccagtactat
aacgtctgtcggcccggcaacgtcaaccctcacaaaggagcggtgaactttgacaacata
gcctacgcatggatagccatattccaggtgataaccctggaaggctgggtggacatcatg
tactacgttatggatgctcactccttctacaattttatatattttatattcctcatcata
gtgggctctttcttcatgatcaacctgtgcctggtagtcatagcgacccagtttgcggag
acgaagcagcgtgagaacgcgttgatgcgcgagcagcgagcgcgttacatgtccaacgac
agtactctggccagctacagcgaaccgggatcctgctacgaagagatgctgagatacgtt
tcacacctctaccgtaaactgacccgacgagtacaacgcgtgtacacaacctggcacagt
aagcgtcgtaagaaggtaaaccctaacggaggaggaagtggtccgggggtcggccgcaga
acgtccggacacgccccctggctccgccccgtacacaacctgctgcaacatcaccagcgc
caccactgtcggcacagcaacggaggacacacccccgtagcaacaggtggggaggagctg
gagatgaggtcacttcctgtcccgggtcgtgacccctctgtgacccctgggctggggtcg
tctcttctgggtcgtctgaacggagggatgaactaccccaccatcctgccctccttcgtc
tgcagctaccgcagcttcacccctaagcccctccccacacagcatcacatccccacacac
ccccacaaccccctccccacacacccccacaaccccctccccacgaacctccacagcccc
ctccccacatcccacggcccccaccccacacaacctcacatccccctccccacacagcct
tacagccccctctccagacacccccacagcccccaacccacagaaccccacatacccctc
cccacacagccccagaggccactcccctcacagccctcgcccctctcagaaaacagtccg
gaccccctcagcaagctgcatcaactcatgggacagcacagccgtcctcggctgctgtac
cagctggctggcgtggtgccctcccctctcctcctggagctgttgggctgcccgctgtgt
gcccgcgccctagagggcatggagctggacctgagcgacctggagggagggcgcggcggc
cgtgggaggcgccggcggaagacagggctgggggcagggctggggctcggggtgaagagg
gccagtaacaggctgctggatctggggatagcattcagagacagactgaaacgcatcgta
gacagcaagtacttcaacagagggatcatgacctccatcctcatcaacactctcagtatg
gggatagaataccatcaacagccggtggagttgactgatatcctggagatcagtaacatc
gtgttcacctgcatgttcctcctggagatgctgttcaagctgctggccttcggtctcttc
ggctatatcaagaacccctacaacatcttcgacagtatcatcgtcatcatcagtgtctgg
gagatcgttgggcaggcggacggcggtctgtcagtcctgcgtaccttccgtctgctgcgg
gtcctgaagctggtccggttcctgcccgccctgcgcagacagctggtggttctgatgaag
actatggacaacgtagccaccttctgtacactgctcatgctcttcatcttcaccttcagt
atcctaggcatgcacctgtttgggtgtaaatttaatcagcagatggagaacggagacacc
atcccagaccgcaagaactttgactcgctactctgggccatcgttactgtgttccagatc
ctgactcaagaggactggaatgtggtcctgtataacggcatggcctccacctctcctctc
tcctctctctactttgtggctctgatgacctttgggaactacgtcctcttcaacctgctg
gtggccatcttggtggagggcttccaggcggagggtgatgccaaccgggcggactctgac
gatgacaagaggtctgatgacgatggagaggaggagaagaaggagaaggttgaagagctg
aaagacacagagctgaagatgtattctctgatgatgacggccaacggtcacgcggaccgc
aacactctggcgcctccaataaccatcacgcgcacggcggcgacacccgtgccgacgccc
aagagctcattgggccccgagtccgttctgggggaggggctggtatatggagatgtgtgt
tcagacttcggggattctcgtcgcggcagcgctgctgcttccatagacccctcagcctac
gaccagcgctctctgtccagccccggccagcactcgcccctccctcccagaggtcagggt
tcagtcagtgggtggggcagcaggaggtcaagttggaacagcctcaaccgcagcagaacc
agcggagagagggagagtctgctctcaggggagggaggaggggaggaggaagagggggcc
ttagagctgctacaggtgtcctctctgggcccgtctgtaacaggggagtacggggactgt
aacgggaggagtcttcatcacatgacctatgaccccaacaaggacctttcacctgacgat
gacatggaggaggacaacctgtggttccgggtcaggagaacgctgcagagccacaagcca
cgctggtgtagagaacatgaagactggaacctctacctgttctcccctcagaactcgttc
cgggtgtgggctaaggggatgatctctcataagatgtttgatcacgtggtcctcctcttc
atcttcctcaactgcatcaccatcgctctggagagacccggcattctgcctcacagcacc
gagagagtgttcctgagtgtctctaacttcgtgttcacgatcatcttcctggctgagatg
actgtcaagattgtagcgttggggttctgctggggtaaacagagctacctgaagagcagc
tggaatgttctggatgggatcctggtgtttgtctctctggtggacatcctggtttctctg
gccttgactggagggaaccgcatcctgggaatcctcagagtactacgactgctacgcaca
ctacgacctctcagggtgatcagtcgattgtccccagggctgaagtctctgttcaagggt
aaattctacctctgtgaaggcccggacaccagaaacatcagcaccaaggcagactgtctg
ctggccaactaccgctggacacgcaggaaatacaacttcgacaacctgggacaggcgctg
atgtctctgttcgtgctgtcctgtaaggatggatgggtcaacatcatgtatgatggcctg
gatgcagtgggagtagaccagcagccggtgaggaaccacaacccgtggatgctcctctac
ttcatctccttcctcctcatcgtcagtttcttcgtcctcaacatgttcgtgggcgtggtg
gtggagaacttccacaagtgtcgtcaggaccaggaagaggaagagcagcggctacgggaa
gagaagaggctcaaaatcctggagaaaaagcgcaggagtaaggagaaggatggtgccgag
gcccaacagagaccctactatgcagactactccccggtgcgtctctccatccacacgttg
tgcaccagccactacctggacctcttcatcaccgtcatcatcggcatcaacgtcgtcacc
atgagcatggagcattacaaccagccacagtatctggaggaggctctgaagtactgtaac
tacctgtttacctgtatcttcatcatcgagaccctgctgaaactagtggccttcggactg
cacaggttctttaaggacaggtggaaccagctggacctggccatagtgctgctgtccatc
atgggcatcactctggaggagctgaagatgaacgcatcgctacccatcaaccccaccatc
atcaggatcatgagagttctgcggatcgctagagtgttgaagctgttgaagatggctaca
gggatgagagctcttctggacacggtcatgcaggccttgccacaggtggggaatctgggt
ctgctcttcatgctgctgttcttcatctacgcagcactgggagtggagctgtttgggaaa
ctggagtgtaacgacagtaatccgtgtgagggtctgagtcgccacgccacctttgagaac
tttgggatggcgttcctcacgctgttcagagtctctactggggacaactggaacggcatc
atgaaggacacgctgcgtgagtgtcgtccagaggagcgttcctgtctgacctaccttcct
ctgatgtctccggtttacttcgtgaccttcgtcctcatggcccagttcgtgctggtcaac
gtggtggtggcggtgctgatgaaacacctggaggagagcaacaaggaagccaaggaggat
gcagagatggacgccgagatcgcgctggagatggagagagctagacgtcttagctccgcc
tctaacgcatcggcgctgggcggggcctacgtggggccacgcccacactcacctggtcag
gaggaggagggtcagtgcagccaggaggaggagcttctgtcaccaaggaagatgtccgta
tccaggatgcattctctccctaacgacagctacatgtttcctcctgtacgatgtgatagc
gccccctaccctctacaggaacacagcagccccctgcaccaagcctcagtgttctcctca
ggctctgtgacatcggtgcactcccagccatgcgaagaccaggctgtactgcccggcctc
tctcaccctggtccccctcacatcgccccgccaaggccctcgcccagggggctgcgtaga
caggtggctgtgaaggttcagagtgttgcctcagtagacagacaggaccccctctcaacc
ctccgcctgctttccccctccccctcccgccccccctctccccccttcctctcggatccc
gccgacgaggaggtgtggcacatcaccagctcagcgcgccattggtgggacagacatgga
agtgggcggtgtcactccctctccccctacgcctcccccgactccccaccctccctgagg
agccgagggagtgcgctcagtctgctgggtgcggggctacaagctcacgacccgaggaag
ggcttcagcgtagacacccagggcttcctggataaaccccgttgtcctgacgaccagcga
cgacactccatcgagatctgcccgtcccctccggaggacccgctgctaggggagctggac
ggggaagagaggaggcccaggggtccggggtcagaggtgagaggtcacaggaagaagagg
atgagcccaccctgcatctccatccaccccccgtgtgacccagcaggccgcgccccctcg
gatccgcaggcagactgtaacccgctgctgagacgcaggaccccctcctacgacgtcgcc
gacgcacacactcctacacacaggctgacgccgacacacacgccaacactaacgccgaca
catcaccacacactcatacagactctccctcacgcagtaacacacaccccgacacacaca
cacacacaccgcctgccccatgcacacactcttatccgtacacatactctacctcattca
cacacacacactccgtcccccacacacaccctgtccctgaactctgacacgagaccttcc
tctctctacagtgactacaagcccctcccacagttcaccttcgaccaaccggagcacaga
tacacgagtggcatgtccgctggcctatcgagcattgaaccagccacaagtccctcgcac
ttcaacagcagggcggggtttagctcgatgaacaggagaactgcccaatga
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integrated database retrieval system
