Opisthocomus hoazin (hoatzin): 104329651
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Entry
104329651 CDS
T08436
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104329651 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oha03021
]
104329651 (POLR1A)
Enzymes [BR:
oha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104329651 (POLR1A)
Transcription machinery [BR:
oha03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
104329651 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
104329651
NCBI-ProteinID:
XP_009933099
LinkDB
All DBs
Position
Unknown
AA seq
1695 aa
AA seq
DB search
MYPERNPSPAFPKLSVKPITNPQYLDNVGNPAINGLYDLALGPPDSREACATCMQNFSNC
PGHFGHIELPLTVYNPLFFDKLYLLIRGSCLSCHTLTCTRAVVHLLLSQLKVLEKGLLHA
VHDLEVILNRFLGQCADPTGSEIEEELNHHVQEILQSHQVKDQCSNVKNVRECRNKLIAQ
FWKAHMSSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVHYKAGGEGILSEPTAIDESQLGK
RGYLTPMTAKEYILALWRNEGFFLRYLFPGMDPYESSGFSPDMFFLDLLVVPPSRYRPVN
RVGDRLFTNGQTVNLQAVMKDAKMIRKLLVFMAKEQCQPIKITEGEIQTETGENNESLDR
SVLTMIPGQTIADKLYNAWIRLQSHVNIVFDSEMDKLVTEKYPGIRQLLEKKEGLFRKHM
MGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPKVHP
GASMVINEDGSRTVLSASSLTQREAIAKQLLTPSSGAPQSGLKIVCRHIKNGDVLLLNRQ
PTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLAF
TDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDKKGRIKTFPP
AIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKIGGRAWVKGPANRCLDLDSMCES
QVIIRNGELLCGVLDKAHFGSSAYGLVHCCYEIYGGKTSGTVLTCLGRLFTAYLQLYRGF
TMGMEDILVKPEADHKRQKIIEKSSQRGFQAVRAALTLPETASCEEVQGKWQDAHLCKDQ
RDFNMVDLKFKEEVNNYNNEINKVCMPLGLHRSFPENNLQLMVQSGAKGSTVNTMQISCL
LGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGL
VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPE
QFPFIAENYEVILKTNHLDEALARMESHQANQQFKAIRKWRARHQNSVQREGGFLMFSQK
KMASVKAQIPGGEIKNGRDPATLQLLKMWYELDEKKRRKYLKKTKKCPDPSLGVWRPDTY
FASVSETFENGVEDYITKWESENKRSYTHPALSSDRLKDLLYLKWQRSLCDPGEAVGLLA
AQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPTMSVPVLSTKKAV
KKVKQLKKQLTRVCLAEVLQKVEIEESLHMKCKQNKHRLYKIKFHFLPYEYYREEKCVKP
RVILHFMETRFFKIFLEAIKRKTAKMASFTEVSARKATRKDLDGDQDKIQTDQGAPEEEE
ENIVDAEADEGDGDATEAKRKKNQEEEVDYESEEENGEENVDENLEDEEAESEKEEKSPG
AEEDQTGATGDDSQHLSFMSQTKKEKGRLLQSAELRVNAVLDSHPSIQDYMFDTENELWC
EVSLTLPLTKVYFDLSSLLASLARSTIIHEVKGITRCLLNESTNKRGENELVLHTEGINL
AQLFRYSDILDLNRLYSNDIHAMAKNYGIESALSVIIKEIKDVFAVYGIAVDPRHLSLVA
DYMCFEGFYKPLNRFGIQSSSSPLQQMTFETSYKFLKEATMMGAHDELRSPSACLVVGKV
VKGGTGLFDLKQPLT
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgtaccccgaaagaaacccttcacctgcttttccgaaattaagtgtaaaaccaataaca
aatcctcagtatttggataatgtggggaatccagccattaatggactgtacgacttggct
ttgggacctccggactccagagaagcgtgtgcaacttgcatgcagaacttcagcaactgc
cctggtcattttggccatatagaactgcctctgactgtctacaatcctctgttttttgat
aaattataccttctaattcgaggttcttgtttgagttgtcacacgctgacatgtactcga
gctgtggttcacttgctgctaagtcagctgaaggttctggagaaagggttgcttcatgcc
gtccatgatcttgaagtcattctgaacaggtttttaggtcaatgtgcagatccaacaggt
tcagaaattgaagaagagttaaatcaccatgttcaggaaatactacaaagtcatcaagta
aaagatcagtgttcaaatgtaaaaaatgtacgtgagtgtagaaataagctgatagcgcag
ttctggaaagcacatatgagttcaaagaaatgcccaaactgcaaatctaggagatcacta
gtgcgaaaagagcataacagcaagctgacagtaacctatccttctacagtgcactataag
gcaggaggggaaggcattctgagtgagccaacagctattgatgaaagccagttaggaaag
agaggatacctgacaccgatgactgccaaggaatacatcctggctttatggaggaatgaa
ggtttctttttgcgttatctgttccctgggatggatccctatgagagttcgggattcagt
ccagacatgttttttttagatctgcttgtggttccgccttcaaggtatcgtcctgtaaat
cgtgttggagaccgactgtttacaaatggtcaaactgtgaacttgcaggctgtcatgaaa
gatgccaaaatgatacggaagctcttggttttcatggcaaaagaacaatgtcagccaata
aaaattacagaaggagaaatacaaacagagacaggagagaataatgaatctctggaccgt
tctgtcctgacgatgattccaggacagaccattgcagataagctatacaacgcttggatt
cgtcttcagagccatgtcaacattgtatttgatagtgagatggacaaactagtgacagaa
aaataccctggtattcgtcagctattggagaaaaaggaaggactgttccgcaagcacatg
atgggaaagcgtgtggattttgctgctcgttcagtcatttgccccgatatgtacattggt
accaatgagattggcattcctatggtatttgctaccaaattgacgtaccctcagccggtc
actccctggaatgtcaaagagctgaggcaggctgtcattaatggcccaaaggttcaccct
ggggcctccatggtcattaacgaagatggatctcgtacagtgttgagtgcgagcagcctg
acccagagggaagccatagctaagcagctcctcactccttcttcaggcgcaccccagtca
ggactgaagattgtttgccgacatattaaaaatggagatgtccttttactgaaccgccag
cccactcttcacagaccctccatccaagctcaccgggcccgaatcctgcctggagaaaaa
gttctgaggcttcactatgccaactgcaaggcttacaatgctgattttgatggtgatgaa
atgaacgcccattttccacagagtgagctcggtagagcagaagcctacaccttagccttt
actgatgaacagtatctggttccaaaggatgggaagccactgcctggtctcatccaggac
cacatgatttctggagtcagcatgacaatccggggctgctttttcaccagagaacaatat
atggagctggtttaccgaggactaacagacaaaaaaggaagaattaaaacctttcctcct
gccattatgaagccacagcgattatggacaggaaaacaggttgtttctacattgttaata
aacatcattccagaaaaccatgtcccgctgaatttgactgggaaagctaagattggtgga
agagcctgggtaaagggtcctgcaaacagatgtctcgatcttgattcaatgtgtgaatct
caggttattattagaaatggggaattactgtgtggagtcttggacaaagctcactttggg
agctctgcctatggcctggtccactgttgctatgaaatctatgggggtaaaaccagtggg
acagtcctaacatgtctaggacgcctctttactgcttatctgcagctctacaggggattt
acaatggggatggaagatattttggttaaacctgaagcagaccacaaaagacaaaaaatc
attgaaaagtcaagccagcgtggttttcaggctgttagagctgctcttactttgccagaa
acagcatcatgcgaggaggtccaagggaaatggcaggatgcccatctctgcaaagaccag
agggattttaacatggttgatctgaaattcaaggaggaagtaaacaattacaacaatgaa
atcaacaaggtttgcatgccccttggtctccacaggagctttccagagaacaatttgcag
ctgatggtacagtcaggagccaaagggtccactgtaaatacaatgcagatttcttgtttg
ctgggccagattgagttggagggtcgaagacccccactgatggcatctggcaaatcgctg
ccgtgtttccagccttacgatttctcccctagctcaggaggatttgtgacgggcaggttt
ctcactgggatcaagccttctgaattcttctttcactgcatggctggcagggaaggtctc
gtggatacagctgtcaaaaccagccgttctgggtacctgcaaaggtgtatcataaaacat
ttggaaggactggtagttcagtatgacctgactgtacgagatagtgatggcagtgtggtg
cagtttctgtatggagaagatgggcttgatatccctaaaactcagttcttgcaacccgag
cagtttcctttcattgcagaaaactatgaggtaatcctaaagacaaaccatctggatgaa
gctttggcaaggatggagtctcaccaagctaaccagcagttcaaagccatcagaaagtgg
cgagccagacaccaaaactctgtgcagagagaaggaggttttctgatgttttcccaaaag
aaaatggcaagtgtaaaagcacagattccaggaggagaaataaaaaatggaagagatcct
gctactttacagttattgaagatgtggtatgaactcgatgagaagaaacgaagaaagtat
ctgaagaagacaaagaagtgtcctgacccaagccttggtgtttggcgtccagatacttat
tttgcatctgtttcagaaacatttgaaaatggagtcgaagattacatcaccaaatgggaa
tctgagaacaaacgaagttacacgcacccagcactgtcttctgataggttaaaggatttg
ttgtatttaaagtggcagcgatctctttgtgacccaggagaagctgtgggtctccttgca
gctcagagtattggggaaccttccacacagatgactctgaacaccttccactttgctggc
agaggtgaaatgaatgtcacattgggtattccaaggttgcgggaaatattgatggtggcc
agtgcaaatattaaaacgccaacgatgagtgttcctgtactcagcaccaagaaagctgtc
aagaaggtgaaacagctgaagaaacagctcacaagagtgtgcttagctgaggtcttgcag
aaagttgagatagaggaatccctgcatatgaagtgcaagcagaacaagcatcgcctctac
aaaatcaaattccatttcttgccctatgaatattaccgagaggagaagtgtgtgaagccc
agggtgatcttgcacttcatggaaacaagattctttaaaatttttctggaagcaattaaa
aggaagactgcaaagatggcatcttttaccgaagtcagcgcccggaaggcaactcggaaa
gatttagatggtgaccaagacaagatacagactgatcagggggctccagaagaagaagaa
gagaacattgttgacgcagaagctgatgaaggggatggtgatgctacagaagcaaaacgg
aagaagaaccaggaagaagaggttgattatgagagtgaagaagaaaacggggaagaaaac
gttgatgagaatctagaagatgaagaggctgaatcggaaaaagaagaaaagagtcctggt
gctgaggaagatcagactggagcaactggtgatgattctcaacatctttcctttatgtct
cagaccaaaaaagagaaaggtcgattacttcagtcagctgagttgcgagtaaatgctgtt
ctggacagccacccatcaatacaggattacatgtttgacaccgaaaatgaactgtggtgt
gaggtttcattgacgcttccgttgacgaaggtgtacttcgatctctcctccttgctggcc
tctctggcgcgaagcaccatcattcatgaggtgaagggcatcacacggtgcttgttgaac
gaaagtaccaataagcgaggagagaacgaactcgttctgcataccgaagggataaacctt
gcgcagctcttcagatactctgatattttggacctgaacagactttattccaatgatatt
catgccatggctaagaattatggaattgagtctgccctgagcgtgattataaaggaaata
aaagatgtttttgctgtatatggcattgcggtagacccgcggcacctttcgcttgtggca
gactacatgtgcttcgaagggttttacaaaccgctgaatcgctttggaattcagtccagc
tcctcccctctgcagcagatgacatttgaaaccagctacaaattcttgaaggaagcaaca
atgatgggcgcccacgatgagctgcggtccccctctgcatgcctggtggttggcaaggtt
gtgaaaggagggactggtttgtttgatctcaagcagccccttacatag
DBGET
integrated database retrieval system
