Opisthocomus hoazin (hoatzin): 104331628
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Entry
104331628 CDS
T08436
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03020
RNA polymerase
oha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104331628 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
104331628 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oha03021
]
104331628 (POLR2B)
03400 DNA repair and recombination proteins [BR:
oha03400
]
104331628 (POLR2B)
Enzymes [BR:
oha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104331628 (POLR2B)
Transcription machinery [BR:
oha03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
104331628 (POLR2B)
DNA repair and recombination proteins [BR:
oha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
104331628 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
104331628
NCBI-ProteinID:
XP_009935264
LinkDB
All DBs
Position
Unknown
AA seq
1122 aa
AA seq
DB search
MSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNE
ARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLC
ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPT
STIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDF
EDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVG
VSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLL
KEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNR
LTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYI
SVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRR
QMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYS
WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFREL
PAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKP
TRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDC
STFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE
DMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKIS
NLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNR
QPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRT
HTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgcagagaattgttgaagatgctccaccgattgatttacaagctgaagcccag
catgccacaggagaagtggaagagccgccccggtatctgctgaagtttgaacaaatctac
ctctccaaacctacgcattgggaaagagatggagcaccctcacctatgatgcccaatgaa
gccagactgagaaaccttacgtactcagcccccttgtatgtggatataactaaaacagtt
attaaagaaggggaggatcagttacagacacagcatcagaagacttttataggaaaaatt
cctattatgttacgttcaacatactgtttgttgaatggcttaactgaccgtgatctttgt
gaactgaacgaatgcccacttgatcctggtggctactttatcattaatggatcagaaaag
gttctgattgctcaagagaaaatggctacaaacacagtgtatgtgtttgcgaagaaagac
tcaaaatatgcctacacaggagagtgtagatcttgtctggaaaattcctctcgaccaaca
agtaccatatgggttagcatgctggccagaggtgggcagggtgcgaagaagagtgctatt
ggtcagcgcattgtagcaactttgccatatatcaaacaagaagtccccattataattgtc
tttcgtgcactgggctttgtgtctgacagggacattttggagcacatcatatatgacttt
gaagatccagaaatgatggaaatggtcaaaccttctctggatgaagcttttgtcattcag
gagcaaaatgttgctctaaacttcattggatcaagaggtgcaaagccaggtgtcaccaaa
gagaagagaatcaagtacgctaaagaagtcttgcagaaagaaatgctcccacatgttggt
gtcagtgacttctgtgagaccaaaaaggcctattttctagggtatatggttcatagattg
ttgctggcagcactgggaagaagagagcttgatgacagagatcattatggcaacaaaaga
ctggatcttgctgggccactgttagctttcctgttcagaggaatgttcaagaatttgctg
aaggaagtgagaatatatgcacaaaagtttattgacagagggaaggatttcaacttggaa
ctggcaattaaaacaagaattatttcagatggtttgaagtattcattggcaactggaaac
tggggtgaccagaagaaagctcatcaggccagagcaggagtatctcaggtgttaaaccgc
ctgacttttgcatctacgctttcccatctgagacgcctgaattctccaattggtagagat
ggcaaactagcaaagcccagacagctgcacaatacgctgtggggaatggtttgccctgct
gagaccccagagggtcatgcagtaggactcgtgaagaacttagccctgatggcttacatt
tctgtggggtctcagccatccccgattttggaattcttggaagagtggagtatggaaaac
ctggaagaaatatctccagcagcaatagctgatgctactaagatctttgttaatggctgc
tgggtaggaatacacaaagatccagaacagctcatgaataccctaaggaagctccgtcgt
caaatggacatcattgtgtcggaggtctcaatgattagagatattcgtgagcgagaaatc
cgcatctatactgatgcaggcagaatttgccgaccccttttaattgtggaaaaacagaag
ttgctcttgaagaaaaggcatattgaccaactgaaggaacgagagtataacaattacagt
tggcaggatcttgtggccagtggtgtagtagagtacattgatactctggaggaagagact
gtgatgctagcaatgactccagatgacttgcaagagaaaggtgtggcatactgttcaaca
tacacgcactgtgagattcacccatctatgatcctgggagtatgtgcatctattattcct
ttccccgatcacaaccagtctcccaggaacacataccagtctgctatgggtaaacaggct
atgggagtttacattacaaactttcatgttcgtatggatacgctggcacacgtgttgtat
tatcctcagaagccccttgtaacaacacgctccatggagtacttgcgatttagagagtta
ccagcaggtatcaactcgattgtagccattgcatcatacacaggctataaccaggaagac
tcggtcatcatgaaccgttctgctgttgacagaggctttttcagatccgtgttctatcgc
tcatacaaagagcaagagtctaagaaagggtatgaccaagaggaagtttttgaaaagcct
acacgtgaaacttgccaaggtatgagacatgcaatctatgacaaacttgatgatgatggt
ctgatagcacctggggtacgtgtgtctggggatgatgtcatcattggcaaaacagtaacg
ctgccagagaatgaagacgaactggagagcactaacagacgtttcacaaagagagactgt
agcactttcctgcgaactagtgagactggtattgtcgatcaggtcatggtaacccttaac
caggaaggatacaaattctgcaagattagggtacgctctgtaagaatcccacaaattgga
gataaatttgccagcagacatggtcagaaaggaacctgtggtatccagtacaggcaagag
gatatgcccttcacctgtgaaggcatcacacctgatataataatcaacccccacgccatc
ccctcccgcatgaccattggtcacttgattgagtgtcttcaggggaaggtgtccgcaaac
aagggagaaattggtgatgccacacctttcaatgatgctgtgaatgtgcagaagatttcc
aatcttctgtcagattatggctatcatctcagaggaaatgaggtcctctacaatggcttc
actggtcgaaaaatcacatcacagatcttcattggtcctacgtattaccagcggttgaag
cacatggtagatgacaaaatccactctcgtgcaagagggccaatccagatacttaacaga
cagcccatggaaggtagatctcgtgatggtggccttcgttttggagaaatggaacgagat
tgccagattgctcacggagcagcccagttcttgagagaaagattgtttgaagcctcggac
ccataccaagtccatgtctgtaatctctgtggaatcatggcgattgcaaacacgaggact
cacacctatgaatgccggggatgtcgtaataaaactcagatatctttggttcgaatgccc
tatgcctgcaaactcctcttccaagaactgatgtctatgagtattgcacctcgtatgatg
agtgtttag
DBGET
integrated database retrieval system
