Opisthocomus hoazin (hoatzin): 104339634
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Entry
104339634 CDS
T08436
Symbol
BRIP1
Name
(RefSeq) LOW QUALITY PROTEIN: Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03440
Homologous recombination
oha03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104339634 (BRIP1)
03460 Fanconi anemia pathway
104339634 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oha03400
]
104339634 (BRIP1)
Enzymes [BR:
oha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104339634 (BRIP1)
DNA repair and recombination proteins [BR:
oha03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
104339634 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
104339634 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
104339634
NCBI-ProteinID:
XP_009944114
LinkDB
All DBs
Position
Unknown
AA seq
1234 aa
AA seq
DB search
MSSDVSEYTIGGVKIIFPCKAYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSA
LSWQQSLYEKSLLTSSCEKEDRKPETSPPCRCTCHSQSKSNEAATSVNHGASCSFSNYET
GSSVKPGSPLTNAECKENESLASKLSAKKRLSLCDSENDDFQVDRKRIRPLETEQQVRKR
HCFAKGVQLVDALEVYHQKKNGELMVHSEKSVKPTTFSPKTSSGPCTECSCSSGKETNKD
TRNTKKKDNGDPSFIPKIFFGTRTHKQISQITRELKRTAYSSVPMTILSSRDYTCIHPVV
SSSGSNRNEMCVELLEGKHGKSCLYYHGVHKLSEHHALQSAHRVYQAWDIEDLVSLGKKL
RACAYFAARELMVGADIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDCARESVS
YGVTESQLRAAREELDFMVNNNIRQKDHEALRAVCCSLTNWLKESSSQLVERGYESSCKV
WSGKEMLTVLHEMGITGITFPILQKHLASVLEKEERISVLGREELIEIPVVSPATQIVLK
GLFMVLLFLFKDNSRYADDYRVALQQTYAWMKENELDVSDTSSFFTRPKHKRSLRQKTVV
HMLNFWCLNPAVAFSDLSDVRTIVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQVW
VGTVGAGPNGRKLCATFQHTETFEFQDEVGALLLSVCRRVGQGILCFLPSYKLLDKLKDR
WMHTGLWRNLELVKTVIAEPQGGAKSDFDELLKIYYDAIKCKGEKDGALLIAVCRGKVSE
GLDFCDENARAVITIGIPFPNVKDLQVELKRKYNDQHKNTRGLLPGSQWYEIQAYRALNQ
ALGRCIRHRNDWGALILVDDRFRNNPNKYITGLSKWIRQQVQHHENFGGALESLHAFARR
NQKGIDCLSECSSEFLHVPSNSKDLSQASQQEATIHLSPEVPAKSEEQQNLVSEISFTTT
SVNPTASNQPSGQKVDVESRSHRGTQRRKHMDSTPKIPVTETEREKKNGWTNADIMKPLT
STPLPVAKNCMSTASSKQKNVNRASELIDSVNQCPSSLISEHKLSVPESCFETTNFSVKN
TEAPVAEEHPDELQLQAEAEDEDESIYFTPELYDDVESEEQKIRPLVPTCNTNENQTDCG
NSTVARDLFAVSTSETLDVTKKKIDDDDGRSTSSHGIMQNEESKNSAVNNVEMTSEIEAE
QVASQEVDTKIRKISLSRSRNKGVLSFLLNNAST
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgatgtgtcagagtatactattgggggagtgaagatcatattcccttgcaag
gcttacccttcacaacttgctatgatgaatgctattgttaagggcttaaataacaggcaa
cactgtttgttggagagccctacaggaagtggcaaaagtttggcattactttgttccgca
ttatcatggcagcagtctctgtatgagaaatcactgcttacgtcgtcgtgtgaaaaggag
gacagaaagccagagacctcaccaccatgtcgctgcacgtgtcattcccaatctaagagc
aatgaggctgcaacaagtgtgaatcatggtgcttcttgttcttttagtaattatgaaaca
gggagttccgtaaaacctggaagcccactaacaaacgcagaatgtaaggaaaatgaaagt
ctagcttcgaaattgtctgccaaaaaaaggttgtctctatgtgacagtgagaatgatgat
tttcaagtagacaggaaaaggattcgtcctttagaaactgagcagcaggttagaaaacgt
cattgttttgcaaaaggagtgcagctagttgatgctttagaagtttatcatcagaaaaaa
aatggagagctgatggttcattctgaaaaaagtgtgaaacccacgactttttctcccaaa
acatcttctggcccttgcactgagtgttcctgttcttccggaaaagaaaccaataaagat
actaggaatacaaagaagaaagacaatggagatccatcattcattcccaaaatatttttt
ggaacacggacacacaagcaaatatcccagattaccagagagctgaagagaacagcgtat
tccagtgtccctatgacaattctttctagccgggattatacctgcattcacccagtggta
tctagtagtggtagtaacaggaacgaaatgtgtgtagaattgctggaaggaaaacatggc
aagtcctgtctttactatcatggtgttcataaactcagtgaacaccatgccctacagtct
gcacatagggtgtatcaggcttgggacattgaagacctagtgagcttgggaaagaagctt
cgtgcctgtgcatattttgcagccagagaactcatggtgggcgcagatattgtattttgt
ccttataattatcttctcgacccgcagatacgggagagcatggaaatcaacctaaaaggc
caagtagtcattttagatgaagcccataatattgaggactgtgctcgggagtcagtgagc
tacggtgttacagaaagtcaactaagagctgctcgagaagagctagatttcatggtcaat
aacaacatcaggcagaaggatcatgaggccctacgggctgtgtgctgctctttgacaaac
tggttaaaggagagctctagtcaactagtagaaagagggtatgaatcttcctgtaaggtt
tggagtggaaaagaaatgctcactgttttgcacgaaatgggaataactggtattactttt
cccattttacagaaacatcttgcttctgtcctggaaaaagaggaaagaatatcggtgctc
ggtagagaggaactaattgagataccagttgtgagccctgccactcagattgtgctgaaa
gggttattcatggttcttttatttctttttaaagataacagcaggtatgcagatgactac
agagttgctctacaacaaacttatgcttggatgaaagaaaacgaacttgatgtttcagat
acaagttccttctttacacggcccaagcataaaaggagtttgcgacagaaaaccgtagtc
cacatgcttaatttttggtgcttgaatcctgccgtggctttttcagacttaagtgatgtt
agaacaattgttctgacatctggtacgctctctccaatggattctttttcttcagagctt
ggtgtgaagttttctattcagctggaggcaaatcacgttattcggaactcccaggtttgg
gttggcaccgttggagcaggccctaatggtcggaagttgtgtgccacgttccagcataca
gagacctttgagttccaagatgaggtgggagcacttctgctttcagtgtgtcgaagagtt
ggccaaggaattttgtgctttttgccatcctataagcttttggacaaattaaaagatcgc
tggatgcacactggcttatggagaaacctggagctggttaagacagtcattgcagagcct
caaggaggggcaaagagtgactttgatgaactgctgaaaatatactacgacgcaataaaa
tgtaaaggagaaaaagatggagcgctccttatagctgtatgcagaggaaaagttagtgaa
ggcttggatttctgtgatgagaatgcccgtgcggttataaccataggtattccgtttcca
aatgtgaaagaccttcaggttgaattaaagaggaagtacaatgaccagcacaaaaataca
agaggccttttaccagggagtcagtggtatgaaattcaagcttatagggctctgaaccaa
gccctgggaaggtgtataagacataggaatgactggggtgctctaattttagttgatgac
cgcttccggaacaaccctaataagtacataactggattatctaaatggattcgtcaacaa
gtccagcaccatgaaaattttggtggtgcacttgaatccttgcatgcatttgctagaaga
aaccagaaaggcattgattgtttgtcagagtgcagcagtgaatttctccatgtaccttca
aattcaaaagacctgtcacaagcctctcaacaggaggcaactattcatctgtcaccagag
gtgcctgctaaaagtgaggagcagcaaaatttggtttcagaaattagttttactacaacc
tcagttaatcctacagcatcaaatcagccaagtggccagaaagttgatgtagagagtcgt
tctcaccgtggaacacaaagaagaaaacatatggactccacacccaaaataccagtgact
gaaacagagagagaaaaaaagaatggttggactaatgctgatattatgaaaccgctgact
tcaacacctttgcctgtagccaagaactgcatgtccacagctagcagcaaacaaaagaat
gtgaatagagctagtgaacttattgatagtgtgaatcaatgcccgtcatcattaatttca
gagcataaactaagtgtaccagaatcatgtttcgaaacaactaatttttcggtcaaaaat
actgaggctccagttgctgaagagcatcctgatgagctacagcttcaagcagaagctgaa
gatgaggatgagagtatctacttcacaccagaactctatgatgatgtagaatcagaagaa
cagaaaatcagaccactggttccaacctgtaatacaaatgagaatcagactgattgtgga
aactccacagttgcgcgtgatctttttgcagtcagcacctcagaaacactagatgtgact
aaaaaaaagattgatgatgatgatggcagaagcacaagttcacatgggataatgcaaaat
gaggagagtaagaatagtgcagttaataatgtagagatgactagtgaaatagaagcagag
caggtagcatctcaagaggtggacaccaaaatacgtaaaatcagtctttccagatcacga
aataaaggtgtgttatcttttctattgaacaatgctagcacatag
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integrated database retrieval system
