Oncorhynchus keta (chum salmon): 118376961
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Entry
118376961 CDS
T09424
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1-like isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oke04040
]
118376961
Ion channels [BR:
oke04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
118376961
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
DUF3447
PKD_channel
DBB
Motif
Other DBs
NCBI-GeneID:
118376961
NCBI-ProteinID:
XP_052340016
EnsemblRapid:
ENSOKEG00005022430
LinkDB
All DBs
Position
28:complement(79160174..79250582)
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AA seq
1125 aa
AA seq
DB search
MQLTKEVAPQNGSYKCVIDDDEKRSHQLSVKTDMTLESVNLFEWARGGDVSQLEGLVRRN
PVLLREQDDSGASLVHHAAGAGNTPVIRFICSISVRDGWKVYDDEGSMPLHWAVERNQPE
TCRALLELGAEPNILNKALMSPLHLAVSHTHNHLVQLLLSHYKTESNLEGGLGNTPVMLA
CSINNTEALSILLSHGARLSSQNKLGHYAIHAAAFAGSKKAMDVILKAGEEMGHSIEEHI
NFLDKSYSSPLHLAVRGGNMDIIEFCIHKGAKIDQQQVDRSTALHFACSQGATEAVKLML
SSYSRLDSIINLPDGACQTPLHRATIFDHTELAEYLISKGADIDYIDSKGLSPLLLATNC
GAWRTVALLLSKGANVKIKDQSGCNFLHLAILQPKGLKNLSGDVLQHNSVKDLLSNEDNK
GCTPLHYACRLGIHESVKNILVLQVSLDRKSKDKKSALHFAAQYGRVNTCQRLLETITDS
RLLNEGDERGLTPLHLASGGGHTKVVELLLRKGALFHCDYKGRSCLHHAASEGYTQTMKI
VLATNIKLLDKLDEDGSTALHLAAREGHVAAVRLLLQRGAEISLNKNHASFFHEALQHGR
KDVVNAIIDSDRCTHILSMFKREAGHRCPVLDLVDLLPESCKYLLDRCIRESDDDTRSPD
YHIDYNFQWLQAPIALTKHAKVDKGLKIQPLAALNAMVKYNRIELLSHPVCKKYLEMKWV
AYGSAAHLLNLFVYLLGLLPLTHLIVSLRPSLDYTGPDNTTAVTMVPISFREQGSFLSSC
MVMVLVMNIYSMGKEVTQMYHQRLTYFKDPFNYQDWTVAIFSLLFVIPLNFNVEGSWYWQ
AGAMAVFQSWMSFLFYLQRFEHFGIYVVMFNEIAKTLWKILLLFFFLMLAFALVFHALML
NQKEFERLDLSGVQIFVMMVGELNYQSNILDIYLDNKLPFPFLTFYMFVVFVILMPILLM
NMMIGLAVGDIAEVKRTAGLKRIAMQIELHTNLEEKMPYWLLKRVDQSFFTIYPNRKCSK
ASILNFWSQGETKEVQTRLMTNSSNSTSVEAELRRQKYRLKEISSVLEKQHDLMKLMIQK
MEITSEADEHDGPTEVKGYRQRSNWGKAKGSNWIPLMKVLERKNV
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcaccaaggaagtggcacctcagaacggttcctataagtgcgtgatcgacgat
gacgaaaaaagatctcaccaactctctgtaaaaacagacatgactctggagtccgtaaac
ctgtttgagtgggctcggggaggtgatgtgtcccagctggagggcttggtgaggaggaac
ccagtgttactgagggaacaggatgactctggtgcctctctggtccaccacgctgctggt
gcaggaaacacccctgttatcaggttcatctgcagcatctcagtcagagatgggtggaag
gtgtatgatgacgaggggtctatgccgctgcactgggctgtggagaggaaccagccagag
acctgcagggctctgttagagctgggggctgaacctaacatcctcaacaaggccctgatg
tcacctctacacctggctgttagccacacacacaaccatctggtccagctcctgttgtct
cactataagacagagtctaacctagaaggaggtcttggcaacactcctgtcatgttagcc
tgctccatcaataatactgaggcgctctctatactgctgagccatggggcgcggctctcc
agtcagaacaaactgggccactatgctatccatgcagctgccttcgcaggctcaaagaaa
gccatggatgtcatcctcaaggctggagaggagatgggtcattccatagaggaacacatt
aatttcctggataagtcatacagtagtccacttcacctggcggtcaggggaggcaacatg
gacatcatcgagttctgcatccacaaaggagccaagattgaccaacaacaggtggaccgg
tccacagctctacattttgcctgttcccagggagctacagaggcagttaaactgatgctg
tcctcctacagcagactggacagcatcattaacctgcctgatggagcctgccagacacct
ctacacagggcaactatatttgatcacacagaattggcggagtacctcatttcgaagggt
gcagacattgactacatagacagtaagggtctttcccccttgctgctggctactaactgt
ggagcctggagaactgtggctcttctgctgtccaaaggtgccaacgtgaaaataaaggac
caatcaggatgtaacttcctccacctggccatcctgcaacccaaaggcctcaaaaacctc
tccggggacgtcttgcagcacaacagtgtgaaggatctgttgagtaacgaggacaacaag
ggctgtactcctctccactacgcctgcagactgggcatccacgaatctgtcaagaacatc
ctggttctacaggtctctctggaccgcaagtccaaggacaagaagtctgccctgcacttc
gctgcccagtatggtcgtgtcaacacctgccagcgtctactggagacaatcacagactcc
cgtctgctgaacgagggggacgagagaggcctgacccccctacacctggcctctggaggg
ggacacaccaaggtggtggagctgctgcttcgtaaaggagccctctttcactgtgattac
aaagggaggagctgtttacaccatgcagcgtcagaggggtacacccagaccatgaagatc
gtcctggccaccaacatcaaactactggacaagctggatgaggatgggagcactgcgctg
cacttggcagcccgggagggtcacgtagcagcggtgagactgctgctccagagaggggcg
gagatcagcctcaacaagaaccacgcctccttcttccacgaagcactgcaacatgggagg
aaggacgtggttaacgccattattgacagtgacagatgtactcacatcctgagtatgttc
aaacgtgaagctggccatcgttgtccagtgttggacctggttgacttgctgccagagtct
tgcaagtaccttctggatcgctgcattagagaatcagacgacgataccagaagtcctgac
taccatattgactacaatttccagtggcttcaggctccaatagcactgacgaagcatgca
aaggtagacaaaggcctgaagatccagcctctggccgctctgaatgccatggtgaaatac
aaccgcatagagctcctctcacaccctgtctgcaagaaatacctggagatgaagtgggtg
gcctacgggagcgctgcccaccttctgaacctgttcgtgtacctgctgggtctgcttcct
ctcacccacctcatagtgagcctgagacccagcctggactacaccggccctgacaacacc
acagctgtcaccatggtgcccatttccttcagagagcaaggttccttcctgtccagctgc
atggtgatggtgctggtgatgaacatttattccatggggaaggaagtgacgcagatgtac
caccagcgtttgacttacttcaaggatccctttaactatcaggactggaccgtggccatc
ttctctcttctctttgtcatccccctgaatttcaatgttgaggggtcatggtactggcag
gctggggcgatggcagtctttcaatcctggatgagcttcctcttctatctgcaaaggttt
gagcactttgggatttacgtggtgatgtttaacgagattgcgaagacattgtggaaaatc
ctactgcttttcttctttctgatgctggcgtttgccttggtcttccatgccctcatgctc
aatcagaaagagtttgagcgactggacctgtctggggtccagatctttgtgatgatggtt
ggagaactgaattaccaaagcaacattctggacatatacctagacaacaaacttccattt
cccttcctcactttctatatgtttgtggtgtttgtcatcctcatgccgatcctgctgatg
aacatgatgatcggtttggcagtcggagacatcgctgaggtaaagagaaccgcaggtctg
aagagaatagccatgcagatcgagctccacaccaatctggaggaaaagatgccgtactgg
ttgttgaagagagtagaccagtcattcttcaccatctaccccaaccgcaagtgctccaag
gcctcaatacttaatttctggagtcaaggagaaacaaaggaagtgcagactcgtctgatg
accaactcatcaaattcaacctctgtcgaggctgaactacgcagacagaagtacagactg
aaggagatatccagtgtgctggagaagcagcacgacctgatgaagctgatgatccagaag
atggagatcacctcggaggcagacgaacatgacgggcccacagaggtcaaaggttacagg
cagaggtcaaactggggcaaagccaagggctccaactggatcccgctgatgaaggtcctc
gagcgcaagaacgtttga
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integrated database retrieval system
