KEGG   Oncorhynchus keta (chum salmon): 118384599
Entry
118384599         CDS       T09424                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03020  RNA polymerase
oke03420  Nucleotide excision repair
oke04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    118384599
  09124 Replication and repair
   03420 Nucleotide excision repair
    118384599
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    118384599
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oke03021]
    118384599
   03400 DNA repair and recombination proteins [BR:oke03400]
    118384599
Transcription machinery [BR:oke03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     118384599
  RNA polymerase III system
   RNA polymerase III
     118384599
  RNA polymerase I system
   RNA polymerase I
     118384599
DNA repair and recombination proteins [BR:oke03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      118384599
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-GeneID: 118384599
NCBI-ProteinID: XP_035627161
EnsemblRapid: ENSOKEG00005053560
LinkDB
Position
5:17191945..17194643
AA seq 127 aa
MSDNEGDFDDGDFDDAEEDEGLDDLENVEDEDQENVKILPAGEGSQANQKRITTQYMTKY
ERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKCRKIPIIIRRYLPDGSYEDWGC
DELIITD
NT seq 384 nt   +upstreamnt  +downstreamnt
atgtccgataacgaaggagattttgatgatggagactttgatgacgctgaagaggatgag
ggattggatgacctggaaaacgttgaagatgaggaccaagagaatgtgaagatcctgcct
gcaggggaggggtcgcaggctaaccagaagaggatcacaacccaatacatgaccaaatat
gaaagggccagggtgctggggacacgcgccctccagatagcgatgtgtgccccagtcatg
gtggagctggagggagagacagaccctctgcaaattgccatgaaagagctgaagtgcagg
aagatccccatcatcatccggcggtaccttcctgatggcagttatgaggattggggctgt
gatgagctcatcatcacagactga

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