Oncorhynchus keta (chum salmon): 118391252
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Entry
118391252 CDS
T09424
Name
(RefSeq) transcription initiation factor TFIID subunit 1-like isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118391252
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
oke01001
]
118391252
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118391252
03036 Chromosome and associated proteins [BR:
oke03036
]
118391252
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
118391252
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
118391252
Protein kinases [BR:
oke01001
]
Serine/threonine kinases: Other
TAF1 family
118391252
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118391252
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
118391252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Motif
Other DBs
NCBI-GeneID:
118391252
NCBI-ProteinID:
XP_052313924
EnsemblRapid:
ENSOKEG00005014572
LinkDB
All DBs
Position
12:complement(29125677..29146819)
Genome browser
AA seq
1940 aa
AA seq
DB search
MSDSDSDEDQDRPFSLTGFLFGNINEDGQLEGDSVLDTESKKHLAGLGSLGLGNLITEIT
ASEEDDPDEDGDTGGTNAEGWVKNDVDAVDYSDINEVAEDETKKYRQAMGSLQPTRRTDD
EDDYDADCEDIDAKLMPPPPPPSLPTPGCKKEDSSPTAASVGDEGDGIILPSIIAPSSLV
DKVDFSSSSDSESETDRPSTGSGSGGPPTCLSLPLAGIMQKDAAKALPGVTQLFPEFRPG
RVLRFLRLFGPGKNMPSVWRSARRKRKRKHRDPQPETPPPEGAEPMEEQGPEKKSGWDYE
YAPPPPPEQCLSDDEITMMAPVESKFSQTAGDGDKVTESRPKVAEWRYGPAQLWYDMMGV
PEDGSGFHYGFKLKEEEEDEQEKQERPEPPPPFSQPPKEGSGDEKDEQALENELFLMVTQ
LQWEDDIIWNGEDVKHKGTKTQRASLAGWLPSSMTRNANAYNAQQGLCRSSSQLVPPTPP
PMPKAPSIGSGSKRDKHHHDHYASHEDDAPWFSIFPIDNEELVYGRWEDNIIWDDQAMDR
MLSPPVLTLDPNDENIILEIPDEKESERTSHSPSKENKKESALKKSRILLGKTGVIKEEP
QQNMSQPEVKDPWNLSNDEFYYPKQQGLRGTFGGNIIQHSISAVELRQPFFPTHMGPMKL
RGFHRPSLKKYSFGTLSQPGPHAAQPLLKQIKKKAKMREQERQASGGGDMFFMRTAQDLT
GKDGDLILAEYSEEYPPLIMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLG
SLHPGQLLPAFENNLFRAPIYLHKMPETDFLVLRTRQGYFIRELVDIFVVGQQCPLYEVP
GPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADF
KRTGMDSNWWVLKPDFRLPTEEEIRAMVSPEQCCAYYSMLVAEQRLKDAGYGEKSFFAPE
EENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVMGVADPTGCGEGFSYVKVPNKP
TQQKAQDDREPQPAKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVVR
TMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLESTEVLSTDTDSS
SAEDSDFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLMGEESDHKGRKARKGFS
SALSTGSHKDDDTSSVTSLNSSATGRRLKIYRTFRDEDGKEYVRCETVRKPSVIDAYTRI
RTTKDDDFIKKFALFDEQHREEMRKERRRIQEQLRRLKRNQEKDRFKSPPEKKAKKIKER
PDLKVKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTVIHNDNEEL
IKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGNNVHCDYLNRPHKSIH
RRRTDPMVTLSSVLESIINDMRDHPNTYPFHTPVNAKVVKDYYKIIPRPMDLQTLRENVR
KRVYPSREEFRENVELIVKNSATYNGAKHPITQVAQTMLDLCDEKLKEKEDRLVRLEKAI
NPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVQPMDLENVRK
NISKHKYQNRDVFLFDVSLVHTNSVKYNGPDSPYTNTALEIVNVCKQTLAEYDEHLTQLE
KDISTAKEAALDAADLDSLDPMTPGTYTPQGRHRRLGEEESDVDIEGFEEEDDDGKPKTP
APAEDGEGDLEDEEDEEEMLLPPRRRLQGHEDDDYDEDEGSSRPAQASVLYQDLLMSDGE
DDASEEEGDNPFSSIHLSESGSDSDREVEVRPPPPPRPHHETARMGLEQDESMMSYGEEL
PDETHLEDSNVSYGSYEGQTHTQTSSMGNGEGYGISEEEEEEAARRRGPSVLSQVQLSED
EEDSEEFRSIGGESDLDSDN
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactcagacagtgatgaagaccaagaccgtcccttctcactcactggctttctc
ttcgggaacatcaatgaagatggtcagctggagggagacagtgtgctggacactgagtcc
aagaagcacctggctggcctgggctctctgggcctgggcaacctcatcacagagatcaca
gccagtgaggaggacgatcctgacgaggatggagacacaggtggcacaaatgcagaggga
tgggtgaagaacgatgttgatgcagttgattattctgacatcaacgaggtggctgaagat
gagactaagaagtaccgtcaggccatgggcagcctgcagcctaccaggagaacagatgat
gaggatgactatgatgcggattgtgaggatattgatgccaagcttatgccacctccacct
cctccaagtctccccacgcctggttgcaagaaagaggattcctctcctacggctgcaagt
gttggggatgaaggagatgggatcatcctgccctccatcatcgctccctcctctctagta
gacaaagtggacttcagcagctcctcagattctgagtcagagacggaccgcccctccaca
ggctctgggtctgggggtcctccaacctgcctcagcctgcccctggctggcatcatgcag
aaggatgctgccaaagccctgcctggcgtcacacagctcttcccagagttcaggcctgga
agggtgctgcggttccttcgactgtttggccctgggaagaacatgccgtcggtgtggcgg
agtgcacgacgaaagaggaagaggaagcaccgcgacccccagccagagacacccccacca
gagggcgctgagcccatggaggagcagggaccagagaagaagtctggctgggactatgaa
tacgccccacctccacccccagaacagtgcctgtctgatgatgagatcacaatgatggcc
ccagtagagtccaagttctctcagaccgctggagacggggacaaggtgacagagtccagg
cctaaggtggcagagtggcgctatggtccggcccagctctggtacgacatgatgggggtc
cctgaggatggaagtggtttccactatggcttcaaactgaaggaggaggaggaagatgag
caggagaagcaggagaggccagaaccaccaccaccattttcacaacctcccaaagaggga
agtggtgacgaaaaggatgaacaggccctggagaacgagctctttctgatggtcacccag
cttcagtgggaggacgacatcatctggaacggagaggacgtgaaacacaaaggcactaag
acccagcgagccagtctggcagggtggctgccttccagcatgacgcgtaatgccaatgcc
tacaacgcacagcagggtctgtgtaggagtagctctcagctggtgccccccactcctcca
cccatgcccaaagccccgtccatcggctctggctccaagagagacaaacaccaccatgac
cattatgcctctcatgaagatgacgccccctggttctccatcttccccattgacaatgag
gagctggtgtacgggcgctgggaagacaacatcatctgggacgatcaggccatggaccgc
atgctctcaccccctgtcctcaccctagaccccaacgatgagaacataattttagaaatc
ccagatgagaaggagtctgagcgtacgtcccactccccgtccaaggagaacaagaaggag
tcggcactgaagaagagtcgcatcctgctggggaagactggggtcataaaggaggagcct
caacagaacatgtcccagcctgaggtgaaggacccatggaacctgtccaacgatgagttc
tattaccccaagcagcagggtctgaggggcaccttcggtggcaacatcattcagcactcc
atctctgcagtggagctgaggcagccgttcttccctactcacatgggacccatgaagctg
cgtgggttccaccgaccctctctgaagaagtactcgttcgggacgttgtcccagccaggt
ccccacgcagcacagcccctactcaaacagatcaagaagaaggccaagatgcgagagcag
gaacgccaggcttctggtggcggtgacatgttcttcatgcggacagctcaggacctgaca
gggaaagacggagacctgattctggcagagtacagcgaggaataccctccgctcatcatg
caagtcggcatggcaaccaagatcaagaactactacaagagaaaaccaggcaaggaccct
ggagctccagactgtaagtacggagagacggtgtactgccacacctctcccttcctgggc
tccctgcaccccgggcagctgctcccggcttttgagaacaaccttttccgcgcccccatc
tacctccacaagatgccagagacagatttcctggtgctgcgtacacggcagggctacttc
atcagagagctggtggacatatttgtggttggacagcagtgtccgctctatgaggtccct
ggacccaactccaaacgagccaacacccatatcagagacttcctgcaggtgtttatctat
cgactgttctggaagagtaaagatcgccctaggagaatccgcatggaggacataaagaaa
gccttcccctcacattcagaaagcagcatccgcaaacgcctaaaactctgtgctgacttc
aagcgtacagggatggactctaactggtgggtgctgaagcctgacttcaggctgcctact
gaggaggagatcagggccatggtgtctccagagcagtgctgtgcctactacagcatgctg
gtggcagagcagagactgaaggatgctggatatggtgaaaagtccttctttgctccagag
gaagagaacgaggaagacttccagatgaagattgatgatgaggtccgcacggccccttgg
aacacgactcgagccttcatcgctgccatgaaggggaagtgtctgctggaggtcatgggg
gtggccgaccccacaggttgtggagagggattctcctacgtcaaagtgcccaacaagccc
actcaacaaaaggcccaggatgaccgggagccacaacccgctaagaagactgtgacaggg
acagacgctgatctgagaagactatcactaaaaaacgccaagcagctgctgcgcaagttt
ggtgttccagaggaggagataaagaagctgtctcgttgggaggtgattgatgtggtgagg
accatgtctacagagcaggcacgctctggcgaggggcccatgagcaaatttgcccgcggg
tcccgcttctctgtagctgaacaccaggagcgctacaaggaggagtgccagaggatcttt
gacttgcaaaacaaagtattggagtccacagaggtcctgtccacagacacagacagcagc
tcagcggaggacagtgactttgaggagatggggaagaacattgagaacatgctgcagaac
aagaagaccagctcccaactgtccagagagagagaggagcaggagaggaaggagctgcag
aggatgctgatgggagaggagagcgaccacaagggacggaaagcacgcaagggcttctct
agtgctttgtccacgggctcccataaagatgatgacacgtcctcggtcaccagcctgaac
tcgtccgctacgggacggcgcctcaaaatctaccgcaccttcagagacgaggacggcaag
gagtatgtccgctgtgagacggtccgcaaaccctccgtcatagacgcctacaccagaatc
agaaccaccaaggacgacgacttcataaagaagtttgctctgtttgacgagcaacataga
gaggagatgaggaaggagcgccggcggatccaggagcagctgaggaggctgaagaggaac
caggagaaggacaggttcaagagcccccctgagaagaaggccaagaagatcaaggagagg
ccagacctcaaggtaaaactgaagtgcggagcttgcggtgccatcgggcacatgcgaacc
aacaagttctgcccactgtactaccagaccaatgctccgccctccaacccggttgccatg
acggaggagcaggaggaggagctggaaaagactgtcatccacaatgacaacgaggaactc
attaaagtggagggaacaaagattgtcctgggcaagcagctcatcgagagtgctgatgag
gtgcgcaggaagtccctggtgctgaagttccccaaacagcagcttccccccaagaagaag
agacgtgttgggaacaatgtacactgtgactacctaaataggccccacaaatccatccac
cgcagacgcactgaccccatggtcaccctgtcctcagtcctggagagtattatcaatgac
atgcgggatcaccccaatacataccccttccacacaccagtcaatgccaaggtggtgaag
gactactataagatcatccctcgtcccatggatctgcagacgctacgggagaatgtgcgc
aagcgtgtgtacccctcccgggaagagttcagagagaacgtggagctcattgtgaagaac
agcgccacatacaacggtgccaagcatccaataacccaggtggctcagactatgctggac
ctttgtgatgagaaactgaaagagaaggaagacaggctggtgagactggagaaagccatt
aaccccctgctggacgatgatgaccaggtggccttttccttcatcctggacaacatcgtc
actcagaagatgatggctgtgcctgactcttggccgttccaccatccagtcaacaagaag
tttgttccagattactacaaagtgatagtccaacccatggacctagagaatgtccgcaag
aacatatccaaacacaagtaccagaatcgggatgtgttcctgtttgatgtcagcctggtc
cacaccaacagtgtcaagtacaacggaccagacagcccttacaccaatacggccctggag
atagtcaacgtatgcaagcagaccctggcagagtatgatgagcacctgacccagctggag
aaggacatctccacagctaaagaggcagctctggatgcagcagacctggatagcctggac
cccatgactcctggaacctacacaccacagggtcgtcatagaaggctaggagaggaggag
tcggacgtggacatcgagggcttcgaggaggaggatgacgacgggaagcccaagacacca
gctcctgcagaggatggtgagggagacctggaggatgaggaggatgaagaggagatgctg
ctgccgccccgcagaaggctgcagggccacgaggatgatgattatgacgaggatgaaggc
tccagtcggccagcccaggccagtgtgctgtaccaggacctgctcatgtcagacggagag
gatgacgccagcgaagaggagggagacaacccgttctcctctatccacctgtcagagagt
ggcagtgactcagacagagaggtcgaggtgcgtcccccgccccctcccagaccccaccac
gagacggcccgcatgggcctggagcaggacgagagcatgatgtcatacggggaagagttg
ccggatgagacccacctggaggacagtaatgtcagttatgggagttatgagggtcagacc
cacacccagacctccagcatgggcaatggagagggctacggcataagtgaggaagaggag
gaagaggcagctcggaggagaggtcccagtgtgttgtcccaggtgcagctgagtgaggat
gaggaggacagcgaagagttcaggtccatcgggggagaaagtgacttagactcagacaac
tag
DBGET
integrated database retrieval system
