Oncorhynchus kisutch (coho salmon): 109872303
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Entry
109872303 CDS
T09179
Name
(RefSeq) vascular cell adhesion protein 1-like
KO
K06527
vascular cell adhesion molecule 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
109872303
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
oki04090
]
109872303
04091 Lectins [BR:
oki04091
]
109872303
CD molecules [BR:
oki04090
]
Proteins
109872303
Lectins [BR:
oki04091
]
I-type lectins (Siglecs)
109872303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
C1-set
C2-set
HET-s_218-289
ICAM1_3_5_D2
Ig_C17orf99
Adhes-Ig_like
Ig_4
Motif
Other DBs
NCBI-GeneID:
109872303
NCBI-ProteinID:
XP_031663080
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All DBs
Position
LG27:complement(35408777..35418655)
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AA seq
629 aa
AA seq
DB search
MTAFALWIVLLPTAASKFVLNLTPKHPMARVGDSLVLTCKASGCAEAVTFTWSSLIDRSL
YGKTETNGTVSLQIFNPLGIHHINTVVCKATCRTKGEYTQNAQTSTKVNVYALPKDPTIS
RSDLLTEGQESNLTCTVPDVYPAKRLIIEWLLGDEVLLKQDEHLEVQTVTSVLKYRPTAQ
NNGQNVTCRATLDIGIDKRTRETVASMNVQYSPRKITISENTQVKIGDGFTLTCRAEGNP
EPTVLWRKLDQDGCSVVAGEGATLLVEEASWSHGGEYECVAHNVVGNLTAHMTVNVQGPP
EKPVLYLSPSGELKAGDSVTITCQSESGPQGRVALRQLTGSQGAELQSNQGHTSITVQSL
TARDSGLYECQATNPYGKQTSSIDITVFDELYTETQRTTATVASMTVQYSPRKITISENT
QVKIGDGFTLTCHAEGNPEPTVLWRKLDQDGCSVVAGEGATLLVEEASWSHGGEYECVAH
NVVGNLTAHMTVNVQAPPTNLSVEVFPSAEFEKGQNVTIWSWAVGVPAPSTTLVRLRDGV
ELHSSDGTFHLVHLGPEHAGLYLLNVTNVVGHQSLSFSLSVSIQDKSVNPKTVIIPAACF
VFMTAAAATLMRFLKRAKQASSYELARTV
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgttcgcgctttggatagtattgctgcctactgcagcgtcgaaatttgtccta
aacctcacaccgaagcatcccatggctcgagtcggcgacagtctggtcctgacgtgcaaa
gccagtggttgcgccgaagccgtcacgttcacctggtcttcattgattgaccggtcactc
tacggtaaaacggagaccaacgggacagtgtccctgcaaatatttaacccgttgggaatt
catcacatcaacacggtcgtctgtaaggccacatgcagaaccaaaggagaatatacacaa
aacgcgcaaacgtctactaaggtgaacgtctacgccttaccaaaggatcccaccatatca
agaagtgaccttttgactgagggtcaggagagtaacctcacctgtacagttccagatgtg
tacccagctaaacggctaatcattgagtggctactgggagatgaagttctcctcaaacaa
gatgaacatctggaagtccagactgtcacctcagtgttgaaatacagaccgacagcccag
aacaatggacagaatgttacctgcagagccacactggacattgggattgacaagagaacc
agagagactgtcgcatcaatgaacgttcaatattcccccagaaagatcactatctcagag
aacactcaggtgaaaatcggagacggttttacactgacgtgtcgtgctgaggggaaccct
gaacctactgtgttgtggagaaaactggaccaagatggctgctcagtcgtggcaggagag
ggtgcgaccctattggtggaagaagcgtcatggtcccacggtggagagtatgaatgcgtg
gcccacaacgtcgtaggaaaccttacagctcacatgactgttaatgttcaaggtcctcca
gagaagcctgttctttatctgagcccatctggtgagctgaaagcgggggacagtgtgacc
attacctgccaatcagagagtgggccgcaggggcgtgtggcgttacgccagttgaccggc
agtcagggggcggagctacagtccaaccagggccacacctccatcactgtccaatcgctg
acagctagagactcgggactgtacgaatgtcaggctaccaatccctatgggaaacagaca
tcttccattgacatcacagtctttgatgagctttatacagagacccagagaaccacagcg
actgtcgcatcaatgacagttcaatattcccccagaaagatcactatctcagagaacact
caggtgaaaatcggagacggttttacactgacgtgtcatgctgaggggaaccctgaacct
acagtgttgtggagaaaactggaccaagatggctgctcagtcgtggcaggagagggtgcg
accctattggtggaagaagcgtcatggtcccacggtggagagtatgaatgcgtggcccac
aacgtcgtaggaaaccttacagctcacatgactgttaatgttcaagcgccgcccacaaac
ctgtctgtggaggtgttcccgtctgctgagtttgagaaggggcagaacgtgaccatctgg
agctgggctgtgggcgttcccgccccctccaccaccctggtgaggctgcgggatggggtg
gagctgcactcctctgacggaaccttccacctggtccacctgggcccggagcacgctggg
ctctacctgctcaatgtcaccaatgtagtgggacaccagagcctcagcttcagcctcagc
gtcagcatccaggataaatccgtcaatccaaagacggtcatcatacctgcagcgtgcttc
gttttcatgaccgctgctgccgcgactctgatgcgattcctgaagagagcaaaacaggca
agttcatatgaacttgcaaggacagtttag
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