Oncorhynchus kisutch (coho salmon): 109880670
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Entry
109880670 CDS
T09179
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109880670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109880670
Enzymes [BR:
oki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109880670
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109880670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
ATP_bind_1
TniB
AAA_16
MMR_HSR1
AAA_22
AAA_18
Motif
Other DBs
NCBI-GeneID:
109880670
NCBI-ProteinID:
XP_020328443
Ensembl:
ENSOKIG00005024793
LinkDB
All DBs
Position
LG19:complement(37491117..37496536)
Genome browser
AA seq
444 aa
AA seq
DB search
MYAMVTEGPEKTGEEGVGAGGGGTRFDLEKETELRFEVEAGEKVHLELLTGLAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVSLLGKTEVAYISKDTPMLLYLNAHTALEQMRRQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRLGRRPTLVDLDVGQSGVSVPGTMSALCIE
RPADVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEENRKASVGGCIIN
TCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVERS
KDCRRESRDEKLREYFYGFRSALFFPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTHHVLSVSCADEGEEGAGGVRRGVLESPVCGFIVVTNVDTQAQVMTV
LSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtatgccatggtgactgagggcccagagaagactggtgaggagggagtgggtgctggt
ggcggggggacgaggtttgacctggagaaggagactgagctgcggttcgaggtggaggcc
ggggagaaggtgcatctggagctgctcacaggattggcggaggtctttggctctgagctc
aaccgcaacaagaagtacacgtttggaccaggttccaagattgctgtgttcacctggcag
ggctgtagtgtttctctcttggggaagacagaggtggcgtacatatcaaaggacacaccc
atgctgctctacctgaacgcacacactgcactggaacagatgagacgacaggcggagaga
gacaatgagaggggaccacgggtaatggtggtggggcctacagatgtggggaagtcgacg
gtgtgcaggctgttgctgagctacgctgtcaggctgggcaggaggcccacactggtggac
ctggatgtgggccagagtggggtgtcagtcccgggcacaatgtcagcactgtgtattgag
cgtccggctgacgtggaggaggggtactctgtacaggcgcctctggtctaccactttggt
tccaccactccaggaaccaacatcaaactctacaacaagttgacgtcgtgtctggccgaa
gtgttctcccagcgctgtgaggaaaacaggaaggccagtgtgggcggctgcatcatcaac
acctgtggctgggtgaagggttctggctaccaggccctggtccactgtgcctcagccttc
caggtggatgtggttctggtgctggaccaggagaggctttacaacgagttgaagcgggac
ctaccgcacttcgtccgagttgtgctgctacccaaatccggaggggtcgtggagcgctct
aaagactgccggcgtgaatctcgggacgagaagctccgggagtacttctatggttttcgc
agtgccttgttcttccctcacgctttcgacgtgcgcttttctgatgtgcgcatctacaag
atcggagcgccttccatccctgactcatgcctgccgcttggcatgtcgcaggacgacacc
cagctgaagctagtccctgtgacacccggtcgtgacctcacacaccacgtgctgagcgta
agctgtgctgatgagggggaggagggggctggaggggtgcgcaggggtgtgctggagagc
ccagtatgtggcttcattgtggtgactaacgtggacacacaggcacaggtgatgaccgtg
ctctcgcccgcccccagacccctccccagacacacactgctcatcatggacattcgcttc
atcgacctcaaatag
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