Oncorhynchus kisutch (coho salmon): 109902344
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Entry
109902344 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: vascular cell adhesion protein 1-like
KO
K06527
vascular cell adhesion molecule 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
109902344
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
oki04090
]
109902344
04091 Lectins [BR:
oki04091
]
109902344
CD molecules [BR:
oki04090
]
Proteins
109902344
Lectins [BR:
oki04091
]
I-type lectins (Siglecs)
109902344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
C2-set_2
V-set
C1-set
ICAM1_3_5_D2
ICAM_N
REJ
Peptidase_A4
Polyketide_cyc2
Motif
Other DBs
NCBI-GeneID:
109902344
NCBI-ProteinID:
XP_020354216
Ensembl:
ENSOKIG00005016204
LinkDB
All DBs
Position
LG13:42313174..42322024
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AA seq
741 aa
AA seq
DB search
MYLILLWVLILPVTAFAFYMELKPKNALLKVGDRHELQCSVKDCNEKVTISWALLEDKPV
FAKIHTSGSESVAVFDPVATAHDDTLLCKGSCGESTKQQRAVVKVYSFPEAPVISGHDRL
LLGQTNTLTCEVTDAYPAEHLRLEWLRGDSMLQTDAESVVSTYTFTPTPEDKQASITCRA
THDQEGVPDDEKTKETSVSLTVLYAPQITSISELTVVRVGSSPTLMCHAEGNPRPEIQWK
AIGPHGQAFIVGQSEELVLTEMTLVDSGQYECVASNTIGNSTASVNVIVEAPPTNTSIKV
SPASKVKEGENVTVSCLSDGAPVGRMVLRRLSEDQDVALQSSNGSSTFFTLSSALLADSA
LYQCEAINEHGSQKVSTLLSVEAYPLEVEMVSGVMAEMGSKLVLSCLASGCPQPAFSWRS
TLDMPVHSRARNQDSLSQLHLGPLGLAHEQAYTCEAKCGSVIKSKQAEVKVFSFPSDPII
ENPGPFLEDGEATLYCSVADVYPASNVQIQWLDGETELHSGVGRYSSELQNVTSTLSFSV
EPEDQGRRITCRVGLQMDVVHQSRRERQAVTLLELHYAPRGTTITVSPASEVKEGESVTV
SCLSDGAPVGWMVLRRLSEDQDVKLQSHNGSSTSFTLSSALLADSALYQCEAFNEHGSQK
ASTQVTVKAPPRNTTVLVYPSTEVQEGQNITVCCRSVSFPPPXGGFEKTGQWHRALLPGW
ELPAGEPYAQRYRPIPGECDQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgtatctcattctgttatgggtattgatactaccagtaacagcatttgcattttatatg
gagctgaaaccaaagaatgcacttttgaaagtcggtgataggcatgagctgcaatgctcg
gtgaaggattgcaatgaaaaagttaccatctcctgggctttgctggaggacaagccagtg
tttgcgaaaatacacacctccgggtcggaatcagtggcggtctttgaccctgtggcgaca
gcacacgatgacacacttctctgcaaaggcagttgcggagaatcgaccaaacaacagcgt
gcggttgtcaaagtatactcatttccagaggcccctgtcatatcaggccatgaccgactt
ctcttgggccagaccaacactctgacatgtgaggtgacagacgcttatcctgcagagcac
ctgaggcttgagtggctgcgaggagacagcatgctccagacagatgcagagtctgttgtg
tccacctacacgttcacgcccacccccgaggacaaacaggcgagcatcacatgcagagcc
actcacgatcaggagggtgtgcctgatgatgagaagaccaaggaaacctctgtttctctc
acagtgctttatgcaccacagattacgtcaatatctgagctgactgttgtgagagttggc
tccagtcccacattgatgtgccatgctgaagggaaccccagaccagagatacagtggaag
gccattggtccgcacggacaggcgttcatagtagggcagagcgaggagcttgtccttaca
gagatgacactggtggattctggtcaatatgagtgtgtggcaagcaacaccattggaaac
agcacagccagcgtgaacgtcattgttgaagctcccccaacaaacacctccatcaaagtg
agcccagccagtaaggtgaaagaaggggagaacgtgacggtgtcctgcctgtcagacgga
gctccggtgggacggatggtgctgaggagactctctgaggaccaggatgtagctcttcag
tccagcaacggctcctccaccttcttcaccctctcctctgccctgctagcagactctgct
ctctaccagtgcgaggccatcaatgagcacggcagccagaaagtcagcaccttgctctcc
gttgaagcgtatcccctggaggtggagatggtatcgggggtgatggctgagatgggatcc
aaactggtgctctcctgcctggcttcgggctgtccccaaccagccttctcctggaggagc
acgctggacatgcccgtacacagccgcgcacgcaaccaggactccctctcccagctccac
ctgggcccacttgggctggcccacgagcaagcctacacctgtgaggccaagtgtggctct
gtcatcaagtccaagcaagcagaggtcaaggtcttctctttcccctcggaccctatcatc
gagaacccgggaccctttctggaagacggagaggccaccttatattgttctgtagccgat
gtctacccagccagtaacgtgcagattcaatggctcgatggggaaacggagctgcactcc
ggcgtgggtcggtactccagtgagctccagaatgtgacatcaacgttatctttttcggtg
gaaccggaggaccaggggagacggatcacctgcagagtcggtcttcagatggacgtggtc
catcaaagtcggagagagaggcaagcggtgactctactggagctccactatgcccccagg
ggaaccaccatcacagtgagcccagccagtgaggtgaaggaaggggagagcgtgacggtg
tcctgcctgtcggacggcgctccagtgggatggatggtgctgaggagactctctgaggac
caggatgtaaagctccagtcccacaacggctcctccacctccttcaccctctcctctgcc
ctgctagcagactctgctctctaccagtgtgaggccttcaatgagcacggcagccagaaa
gctagcacacaggttacagttaaagcacctcctaggaatacaacagtcctggtctatccg
tccactgaggttcaggagggccaaaatatcaccgtatgctgtcgctctgttagcttcccc
ccacctngtggtggttttgagaaaactggacaatggcacagagctctactccccggatgg
gaacttcctgctggtgaaccttacgcccaaagatacaggcctataccaggtgaatgtgac
caatga
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