Oncorhynchus kisutch (coho salmon): 109905208
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Entry
109905208 CDS
T09179
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109905208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109905208
Enzymes [BR:
oki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109905208
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109905208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
AAA_16
TniB
AAA_22
MMR_HSR1
CbiA
AAA_18
Motif
Other DBs
NCBI-GeneID:
109905208
NCBI-ProteinID:
XP_020358046
Ensembl:
ENSOKIG00005011285
LinkDB
All DBs
Position
LG15:complement(33549963..33553956)
Genome browser
AA seq
445 aa
AA seq
DB search
MATEGSEKAGEEAAGAGAGAGGGGTRFDLEKETELRFEVEAGEKVQLELLTGLAEVFGSE
LNRNKKYTFPPGSKIAVFTWQGCSVSLSGKTEVAYVSKDTPMLLYLNTHAALEQMRRQAE
RDNERGPRVMVVGPTDVGKSTVCRLLLSYAVRLGRRPTLVELDVGQSGVSVPGTMSALCI
ERPADVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCII
NTCGWVKGSGYQALVHCASAFEVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVER
SKDCRREARDDKIREYFYGFRGVSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVTPGRDLTHHVLSVSCADEGEEVAGGVRRGLLESPVCGFIVVTNVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgagggctcagagaaggctggtgaggaggctgcgggggctggggcgggtgct
ggtgggggggggacgaggtttgacctggagaaagagacagagctgcggtttgaggtggag
gctggggagaaggtgcagctggagctgctcacgggattggctgaagtctttggttcagag
ctcaaccgcaacaagaagtacacgttcccaccgggctccaagatcgctgtgttcacctgg
cagggctgcagtgtttctctctcagggaagacagaggtggcgtacgtatcaaaggacaca
cccatgctgctctacctgaacacccacgccgcactggaacagatgagacgacaggcagag
agagacaacgaaaggggcccacgggtgatggtggtggggcctacagacgtggggaagtcg
acggtgtgcaggctgttgctgagctacgctgtcagactgggcaggaggcctacactggtg
gagctcgacgtgggccagagtggggtgtcagtcccgggcacaatgtcagcgctgtgtatt
gagcgtcccgctgacgtggaggaggggtactcagtacaggctccactggtctaccacttt
ggctccaccacaccaggaaccaacatcaaactctacaacaagttgacatcatgtctggct
gaggtgttttcccagcgctgtgaggtgaacaggaaagccagtgtgggcggctgcatcatc
aacacctgtggatgggtaaagggttctggctaccaggccctggtccactgcgcctcagcc
tttgaggtggatgtggttctggtgctggaccaggagaggctctacaacgagctgaagcgg
gacctgccgcatttcgtccgagtcgtgctgttacccaaatccggaggggtcgtggagcgc
tccaaagactgccggcgcgaggctcgggacgacaagatccgggagtacttctacggtttc
cgcggtgtctctttctaccctcacgccttcgacgtgcgcttttctgacgtgcgcatctac
aagatcggagcgccatccatcccggattcgtgccttcctctggggatgtcgcaggacgac
acccagctgaagcttgtccctgtgaccccaggtcgcgatctcacgcaccacgtactgagc
gtaagctgtgccgatgagggggaggaggtggctgggggggtgcgcaggggcttgctggag
agcccggtgtgtgggttcattgtggtgactaacgtggacacacaggcacaggtgatgact
gtgctctcgcccgccccaagacccctccccagacacacactgctcatcatggacattcgc
tttatcgacctcaaatag
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