Oncorhynchus kisutch (coho salmon): 109905644
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Entry
109905644 CDS
T09179
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03440
Homologous recombination
oki03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109905644 (brip1)
03460 Fanconi anemia pathway
109905644 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oki03400
]
109905644 (brip1)
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109905644 (brip1)
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
109905644 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
109905644 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Motif
Other DBs
NCBI-GeneID:
109905644
NCBI-ProteinID:
XP_031646606
Ensembl:
ENSOKIG00005015939
LinkDB
All DBs
Position
LG15:62469979..62515352
Genome browser
AA seq
1576 aa
AA seq
DB search
MAAPSVEYTIGGVKIQFPCKAYPSQLAMMNSIVRGLNHGQHCLLESPTGSGKSLALLCSA
LAWQQAQYGKLEQDGSSPTEGKKPAVTTPCQCACHSKPASVPDNRPKALATVVVDLTGSP
EVVMAQGSSSPTDPVPPPPEEYKPKSLASRLSDKLQTSLTSEDDDFQPDRKRIRTPAMEQ
KGRKRRCLEPGVVFIDDEPEGERPVPGAQTWTVELSTQAQTIDLPLDRNGCSPMVSCSLC
PCASSKGGQNGAAGKSSKEKDKEGKKKQVPKIFFGTRTHKQITQIAHEMKRTLYSSAPMT
ILSSRDHTCVHPEVVPHSNRNERCKELLEAKNGVSCRFKNGVHKMQDQNTLQWVHGLHQA
WDIEDLVRLGGRLRACSYYAARDLMQEACIVFCPYNYLLDPLIRESMQINLKGQIVVLDE
AHNIEDCARESASYTLNKPQLLSAREELDGMVTHNIRRSNHEPLRAFCCSLLNWMQESCS
VLAEREYEMSCKVWNGKEVLGLFHTMGITADTFAMLQKHLAAVLEKEERVGLVNGREDTV
EVPTISSASSSVLKSLFMVLDFLYRDKSRFAEDYRVALQQSYAWTTAPDIPDAQGFFARP
NRRRHSAKTKTLVHTLSFWCLNPAVAFSDLSDSVHSIVLTSGTLSPMGSFSSELGVKFSI
QLEASHVISKSQVWVGTLGSGPQGRKLCATFQHAETYAFQDEVGALLLRVCQAVGRGVLC
FLPSYKMLDKLRDRWTNTGLWEKLEERKTVITEPRGGGKGDFDELLQVYYDAIRISGEFA
GDRDGALLMAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHCKARG
LLSGSRWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFGNNPNKYISGLSKWVRNLVR
HHDTFRGAMQSLVAFSQCQQGAGEIHGAGSQTFNSTTVLSPASQSRPSPSPSSDCLLWAT
VHHTTTSQVPEPHTQLQGFRSWVPPTVSVPPALWPLPTTSTGKSGNIGDQKQTQQHPSTH
PNSDPKAPPPNISTPLTTPRSVHHLFTSTLVSSTHFKTPIFQAQDPSRHQDHLDDPPRPD
SVEEEEKKIQENVSQDPLIPFQGGMAREGLDGPVSTPPSPDQGPVLVLSPVEVPASCEPR
QTTVVVDDPTLLEEEEDQSIFFTPEMFDDEEEVVDTKPLPRTVQGMMTGEGTVLASSLAL
STGTAQALSEDLFGPEQGPREDTETVTTTDTKRGGALAPSASRDCVSVGWEQDRQQGSRI
GSGDEAQQTQRQEDQGQGEGQELNQGATQGQSRQTGSRTHRLSRSKQKAPEPSSGHCAEV
TRPTQPWKGRVVLSKTQAKNQDQTHVRCSQRGRGRTKAGVPFAPTSSLPVQPQTKDQSLE
VQGRTARVRSASVAGPEETEGEQAVTGWKDQASTKPGTSIRAKTRGPEDSFKSETSRTAR
GQEDVPKPETNSSKAKGQEVTSVFCQQYSSRGRLKTTCRTEVKRFRGKEARLPPSWEGLE
EVTSSTPATTTVHLDIVNPKCEGRVCVRGSPGGEPETESSSTGLAKEGPGSQNSLQKGIK
VQDRGGNRASRRRKVR
NT seq
4731 nt
NT seq
+upstream
nt +downstream
nt
atggctgctccctcagtggagtacaccataggaggggtgaagatacagtttccttgcaaa
gcctacccctcgcagctggccatgatgaactctatagtgcgagggctgaatcatggacag
cactgtctattggagagccctacagggagtggcaagagcctagccctgctctgctctgcc
ctggcctggcagcaggcacaatatggtaagcttgaacaggacggcagcagtcctacagag
ggtaagaagccagctgtcaccaccccctgtcagtgtgcctgtcatagcaaacccgccagt
gtcccagacaacaggcccaaagcactagccactgtggtggtggacctcacaggctcaccg
gaggtagtgatggcacagggatcatcttctcccacagacccagtgccccctccaccagag
gagtacaagcccaagtctttagcctctcgtctgtctgacaagctccagacctccctcacc
tccgaggatgatgacttccagcccgataggaaacgcatccgcacccctgccatggagcag
aagggtcgtaagaggaggtgcttggagccgggagtggtgtttatagatgatgagccagaa
ggagagcggccagtgcctggagcacagacctggactgtggagctgagtacccaggcacag
actatagacctgccacttgatagaaacggctgttcccccatggtgtcctgctctctctgc
ccctgtgcctcatccaaaggcggccagaatggagccgcggggaagtcttcaaaggagaag
gacaaagagggcaagaagaaacaagtccccaagatcttctttggcactcgcacccacaaa
cagatcactcagatcgcccacgagatgaagcgtacgctctactcttccgcccccatgacc
attctgtccagtagggaccacacctgtgttcacccagaggtggtgcctcattccaaccgc
aacgaacgctgcaaggaactgctggaagccaagaatggcgtgtcgtgccgcttcaaaaac
ggcgtgcacaagatgcaggaccagaacactttgcagtgggtccatggtctccaccaggcc
tgggacatagaggacctggttcggctggggggccggctgagggcctgctcctactacgct
gcaagggacctcatgcaggaagcctgtatcgtcttctgtccctacaactacctactggac
cccctcatcagggagagcatgcagatcaacctgaagggtcagattgtggttctggatgag
gcccacaacatagaggactgtgccagggagagtgccagctacaccctgaacaaaccccag
ctgctctctgccagggaggagctggacggcatggtgacccataacatcagacgctccaac
cacgaacccctacgtgccttctgctgctccctgctcaactggatgcaggagagctgcagt
gttctggctgaaagggagtatgagatgtcttgtaaggtgtggaacggcaaggaggttctg
ggactcttccacaccatgggcatcactgctgacacttttgccatgctgcagaaacacctg
gcagcggtgttggagaaggaggagcgagttgggctggtgaacgggagagaggacaccgtg
gaggtccccaccatcagctcagccagctcctctgtcctcaagagtctcttcatggtgctg
gacttcctctacagggacaagagcaggtttgcagaggactaccgcgtggcgctgcagcag
tcctacgcctggaccactgctccagacataccagatgctcagggcttcttcgccaggccc
aaccgccgacgccacagtgccaagaccaagaccctcgtacacacactcagcttctggtgc
ctcaaccctgctgtggcgttctcagacctttcggacagtgttcacagcatcgtgttgacc
tcaggcacattgtctcctatgggatccttctcctcagaactgggggtcaagttctctatc
cagctagaggccagccacgtcatcagcaagtcacaggtgtgggtgggtacgctgggctct
ggcccccaggggaggaagctgtgtgccaccttccagcatgctgagacctatgccttccag
gatgaggtgggagccctgctgctcagggtctgccaggccgttggaaggggagtgctctgc
tttttgccctcctacaagatgctggacaagctgcgtgaccgctggaccaacacagggctg
tgggagaagctggaggagaggaagactgtgatcacagagcccagaggaggagggaaggga
gactttgatgagctgctgcaggtgtactatgatgccatcagaatcagtggagagtttgca
ggggacagagatggagctctgctgatggcagtatgtagagggaaggtgagtgaaggactg
gacttcacagacgacaacgccagagcagtggtcaccattggcatccccttccctaacatc
aaggacctgcaggtggagctgaagatgaagtataatgaccagcactgtaaagccaggggt
ctgctgtcaggctcccgctggtatgagatccaggcctacagagccctcaaccaggccctg
ggcaggtgtatcagacacaagaatgactggggagccctcattctggtagacgacaggttt
gggaacaaccccaacaaatacatctcaggtctgtccaagtgggtgcgtaacctggtcagg
caccacgacaccttcagaggtgccatgcagtcgctggtggccttctcccagtgccaacag
ggggcaggagagatccatggagcagggagccagaccttcaacagcaccaccgtcctgtct
ccagccagtcaatctaggcccagtcctagccccagctcagactgccttctctgggccacg
gtgcaccacactaccacgtctcaggtcccagagccccacacccagctacaggggttcagg
tcctgggttccccctacggtctctgtcccacctgctctgtggcctctccccaccaccagc
actggaaagagtggaaacataggtgaccagaagcagacacagcaacacccctccactcat
ccgaacagtgatcccaaggccccgcccccgaacatctccactcccctcaccaccccacgg
tccgtgcaccacctcttcacctccacccttgtgagctccacccacttcaagactccaatc
ttccaggcccaggacccaagcaggcatcaagatcatctggatgacccgccacggcctgac
tctgtggaggaggaggagaagaagatccaggagaatgtgagtcaggatcccttgatcccc
ttccaaggagggatggcccgtgaggggctggatggaccggtatctacccctcccagcccg
gaccagggtccggttctagtcctctccccagtggaggtccctgccagttgtgagcccaga
cagaccactgtagttgttgacgatcccaccctgctagaggaagaggaagaccagagcatc
ttcttcacacctgagatgtttgatgacgaagaggaggtggtggacaccaagcctctcccc
aggacagtgcaggggatgatgacaggggagggaactgtgcttgcgtccagccttgctctc
tctaccggaacagcccaggctctgtctgaggacctgtttggcccagagcagggtcccagg
gaggacacagagacagtcactaccactgataccaagaggggaggcgctctcgctccctca
gccagtagagactgtgtcagtgtgggatgggaacaggacaggcagcaggggagtaggata
gggagtggtgatgaggcccaacagacccagagacaggaggaccaaggtcagggagaagga
caggagctgaaccagggggcgacccaaggccagagcaggcagacaggcagcaggacacac
agactgtccaggtccaaacagaaagctccagagccatcctcaggtcactgcgctgaggtc
acaagaccgacccagccatggaaagggagagttgttctttccaagactcaggctaagaac
caggaccagacccatgtcaggtgcagtcagaggggcagaggcagaaccaaggcaggggtg
ccctttgcacccacctccagtctcccagttcagccacagaccaaagaccagagcctagag
gtccagggcaggacagccagagtcagatctgctagtgtcgctggtcctgaagagactgag
ggagagcaggctgtcacaggatggaaggaccaggcctctaccaagcctgggactagtatt
agggccaagaccagggggccagaggactctttcaagtcagaaaccagcaggacggccagg
gggcaggaggatgttcccaagccagagaccaacagcagtaaggccaaggggcaggaggtt
actagtgttttctgccaacagtacagcagcagggggagattgaagacaacatgcagaaca
gaggtgaagagattcagggggaaagaggcacggttgcccccctcttgggagggcctggaa
gaagtcacgagcagcacccccgccaccacaacagtgcacttggacattgtcaaccctaaa
tgcgagggtagagtgtgtgtccgaggaagtcctggaggtgaacctgagactgagagtagc
tccactggtctagcaaaggaagggcctggtagtcagaactctttacagaaaggcatcaag
gtgcaggatagagggggcaacagggcctctcggaggaggaaggtgcgttag
DBGET
integrated database retrieval system
