Oryzias latipes (Japanese medaka): 101158455
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Entry
101158455 CDS
T02443
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101158455 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101158455 (clp1)
Enzymes [BR:
ola01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
101158455 (clp1)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101158455 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
MMR_HSR1
ATP_bind_1
AAA_22
TniB
nSTAND3
AAA_16
CbiA
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
101158455
NCBI-ProteinID:
XP_004073288
UniProt:
H2LF13
A0A3P9IEV4
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All DBs
Position
10:complement(14104012..14106821)
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AA seq
441 aa
AA seq
DB search
MATESVEKTSDDAPANGKDCTRFDLEKETELRFEVEAGEAAEQVELELLSGLAEVFGSEL
NRNKKYVFGPGSKIAVFTWQGCSVNLHGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
ENERGPRVMVVGPTDVGKSTVCRMLLNYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEMFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASTFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDTRDEKIREYFYGFRGVSYYPFSYEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSVDDGDEGARKSIVEIPVCGFIVVTFVDTQTQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagtctgtagaaaaaactagcgacgatgctccggctaacggcaaagattgc
acccgattcgacttggagaaggagaccgagcttcggtttgaggtggaagcaggagaggcc
gcggagcaagtggagctggaactcctgtcgggactggctgaagtgttcggttcagaactg
aaccgcaacaagaagtacgtgtttggaccaggatccaaaatagctgttttcacctggcaa
ggatgcagtgtgaatcttcatggaaagccagaggtggcctatgtgtctaaagatactccc
atgctgctctacctgaacacccacgctgccctggaacagatgagaaaacaagcagaacgg
gaaaatgagaggggaccaagggtgatggtggtgggtcccacagatgtagggaagtcaaca
gtgtgtcgaatgcttctcaactacgctgtcagggttggcaggagaccaacccttgtggaa
ctggatgttggacaaagtggtgtgtcagtaccagggacggtgtcagcgctgtgcattgaa
cggccggcggatgtggaggagggcttctctgtccaggctcctctggtctaccactttggc
tccaccactccaggcaccaacattaaactttataacaagctgacatcctgcctcgctgag
atgttttcccagcgctgtgaggtaaacaggaaggccagcgtaggaggctgcatcatcaac
acctgcggctgggtgaagggttcaggataccaggctttggtccactgtgcctccaccttt
caggtggatgtggtgctggttttggaccacgaaaggctctacaatgagcttaaacgcgac
ctgccccactttgtgcgagttgtacttctgcccaagtctgggggggtggtggagcgctcc
aaagagtgccggcgggacaccagggatgaaaagatccgcgagtatttctatggattccgt
ggagtgtcctactaccccttttcctatgaggtgcgcttctctgacgtccgcatttacaaa
attggtgcaccgtctatcccagactcgtgcttacctctagggatgtctcaggacgatacg
cagctaaagctggtgcctgtcacaccagggagagacctgacgtaccatgttctgagcgtg
agcagcgttgacgacggagacgaaggtgcaagaaagagcattgtggagattcctgtgtgt
ggttttattgtggtaacttttgttgacactcagacacaggtgatgaaagtgttatcccca
gcacccagacctctccccagacacactctgcttatcatggacatacgctttatggacatg
aagtaa
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